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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR007148
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 10 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.539s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0246579.1
n.a. Periodic tryptophan protein-like protein [Medicago truncatula] gi|357507105|ref|XP_003623841.1| chr0 127772333 127778039 -
2 domain predictions
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Lj1g3v4668250.1
n.a. PREDICTED: WD repeat-containing protein 3-like [Glycine max] gi|356505281|ref|XP_003521420.1| chr1 55403784 55411705 +
2 domain predictions
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Lj2g3v2234060.1
n.a. Periodic tryptophan protein-like protein [Medicago truncatula] gi|357507105|ref|XP_003623841.1| chr2 33007089 33013178 -
2 domain predictions
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Lj3g3v2225740.1
n.a. PREDICTED: WD repeat-containing protein 43-like [Glycine max] gi|356522359|ref|XP_003529814.1| chr3 27482704 27491126 -
2 domain predictions
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Lj3g3v2225740.3
n.a. PREDICTED: WD repeat-containing protein 43-like [Glycine max] gi|356522359|ref|XP_003529814.1| chr3 27484581 27491126 -
2 domain predictions
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Lj4g3v2289100.1
n.a. PREDICTED: WD repeat-containing protein 43-like [Cicer arietinum] gi|502150903|ref|XP_004508181.1| chr4 31812817 31820482 -
2 domain predictions
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LotjaGi1g1v0124400.1
n.a. WD40 repeat-like protein; TAIR: AT1G15440.1 periodic tryptophan protein 2; Swiss-Prot: sp|Q15269|PWP2_HUMAN Periodic tryptophan protein 2 homolog; TrEMBL-Plants: tr|A0A0S3RH52|A0A0S3RH52_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0124400 LjG1.1_chr1 19712311 19718515 -
2 domain predictions
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LotjaGi1g1v0685500.1
n.a. WD-repeat protein, putative; TAIR: AT3G21540.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q8BHB4|WDR3_MOUSE WD repeat-containing protein 3; TrEMBL-Plants: tr|K7KFV5|K7KFV5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0685500 LjG1.1_chr1 125230947 125239940 -
2 domain predictions
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LotjaGi1g1v0685500.2
n.a. WD-repeat protein, putative; TAIR: AT3G21540.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q8BHB4|WDR3_MOUSE WD repeat-containing protein 3; TrEMBL-Plants: tr|A0A1J7GXE0|A0A1J7GXE0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0685500 LjG1.1_chr1 125232563 125239911 -
2 domain predictions
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LotjaGi4g1v0337300.1
n.a. WD-repeat protein; TAIR: AT5G11240.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q15061|WDR43_HUMAN WD repeat-containing protein 43; TrEMBL-Plants: tr|K7L3M1|K7L3M1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0337300 LjG1.1_chr4 71771087 71783023 -
2 domain predictions
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