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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR008700
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

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Download the entire search result as a CSV file.

We have found 10 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.004s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v1219020.1
n.a. AT5G09960-like protein [Arabidopsis arenosa] gi|217426823|gb|ACK44531.1| chr1 14828961 14831002 -
2 domain predictions
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Lj2g3v3022770.1
n.a. PREDICTED: leucine zipper protein 4-like isoform X2 [Cicer arietinum] gi|502098444|ref|XP_004491235.1| chr2 39037519 39040812 -
2 domain predictions
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Lj2g3v3303460.1
n.a. PREDICTED: RPM1-interacting protein 4-like [Cicer arietinum] gi|502099601|ref|XP_004491519.1| chr2 41786773 41788255 -
2 domain predictions
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Lj3g3v0730080.1
n.a. PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cicer arietinum] gi|502155966|ref|XP_004510259.1| chr3 8170154 8178841 -
2 domain predictions
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Lj4g3v1389240.1
n.a. NOI protein [Medicago truncatula] gi|357477235|ref|XP_003608903.1| chr4 21645230 21646658 +
2 domain predictions
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LotjaGi1g1v0051600.1
n.a. RPM1-interacting protein 4 (RIN4) family protein; TAIR: AT5G19473.1 RPM1-interacting protein 4 (RIN4) family protein; Swiss-Prot: sp|A4IFD7|ZNT7_BOVIN Zinc transporter 7; TrEMBL-Plants: tr|I3S0R3|I3S0R3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0051600 LjG1.1_chr1 7291550 7294632 +
2 domain predictions
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LotjaGi3g1v0085600.1
n.a. RPM1-interacting protein 4; TAIR: AT3G25070.2 RPM1 interacting protein 4; Swiss-Prot: sp|Q8GYN5|RIN4_ARATH RPM1-interacting protein 4; TrEMBL-Plants: tr|I3SYB2|I3SYB2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0085600 LjG1.1_chr3 9636231 9645650 +
2 domain predictions
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LotjaGi4g1v0009800.1
n.a. RPM1-interacting protein 4; TAIR: AT3G25070.1 RPM1 interacting protein 4; Swiss-Prot: sp|Q8GYN5|RIN4_ARATH RPM1-interacting protein 4; TrEMBL-Plants: tr|K7MJC3|K7MJC3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0009800 LjG1.1_chr4 1284474 1292280 -
2 domain predictions
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LotjaGi6g1v0178200.1
n.a. RPM1-interacting protein 4 (RIN4) family protein; TAIR: AT5G19473.1 RPM1-interacting protein 4 (RIN4) family protein; Swiss-Prot: sp|A7EMM3|NST1_SCLS1 Stress response protein nst1; TrEMBL-Plants: tr|I3STR9|I3STR9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0178200 LjG1.1_chr6 47018557 47023371 -
2 domain predictions
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LotjaGi6g1v0288600.1
n.a. RPM1-interacting protein 4; TAIR: AT3G25070.2 RPM1 interacting protein 4; Swiss-Prot: sp|Q8GYN5|RIN4_ARATH RPM1-interacting protein 4; TrEMBL-Plants: tr|A0A0R0I967|A0A0R0I967_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0288600 LjG1.1_chr6 60553535 60554731 -
2 domain predictions
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