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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013320
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 826 results. Now displaying 1 of 17 with 50 rows per page. This search has taken 6.047s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3023720.1
LjKlavier leucine-rich repeat receptor-like kinase [Lotus japonicus] gi|353677868|dbj|BAL04590.1| chr1 34474974 34479067 +
2 domain predictions
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Lj2g3v1467920.1
LjSymRK receptor-like kinase SYMRK [Lotus japonicus] gi|21622628|gb|AAM67418.1|AF492655_1 chr2 23244149 23250251 -
2 domain predictions
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Lj2g3v1828350.1
LjNfr5 Nod-factor receptor 5 [Lotus japonicus] gi|37651074|emb|CAE02597.1| chr2 27399749 27402036 -
2 domain predictions
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Lj2g3v2904690.1
LjNfr1 Nod-factor receptor 1b [Lotus japonicus] gi|37651060|emb|CAE02590.1| chr2 37916948 37922957 +
2 domain predictions
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Lj3g3v3375770.1
LjHar1 hypernodulation aberrant root formation protein [Lotus japonicus] gi|24940156|emb|CAD42335.1| chr3 41520393 41525499 +
2 domain predictions
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Lj0g3v0008599.1
n.a. PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 9 [Glycine max] gi|356543758|ref|XP_003540327.1| chr0 3489619 3491164 -
3 domain predictions
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Lj0g3v0010069.1
n.a. PREDICTED: probable receptor-like protein kinase At5g39030-like isoform X2 [Cicer arietinum] gi|502123882|ref|XP_004498297.1| chr0 4105156 4105460 -
2 domain predictions
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Lj0g3v0019539.1
n.a. PREDICTED: serine/threonine-protein kinase PBS1-like isoform X2 [Cicer arietinum] gi|502083819|ref|XP_004487574.1| chr0 7745945 7749305 -
2 domain predictions
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Lj0g3v0027059.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 3-like [Glycine max] gi|356537750|ref|XP_003537388.1| chr0 9973110 9974915 +
2 domain predictions
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Lj0g3v0035439.1
n.a. PREDICTED: probable receptor-like protein kinase At1g11050-like [Cicer arietinum] gi|502124054|ref|XP_004498364.1| chr0 11295149 11297703 -
2 domain predictions
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Lj0g3v0042109.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] gi|356514907|ref|XP_003526143.1| chr0 13847734 13849153 -
2 domain predictions
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Lj0g3v0050299.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710-like [Glycine max] gi|356527105|ref|XP_003532154.1| chr0 17090362 17095739 +
2 domain predictions
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Lj0g3v0059499.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like isoform X2 [Cicer arietinum] gi|502166662|ref|XP_004513950.1| chr0 19683288 19688507 +
2 domain predictions
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Lj0g3v0059509.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] gi|356545297|ref|XP_003541080.1| chr0 19690149 19694423 +
2 domain predictions
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Lj0g3v0061859.1
n.a. PREDICTED: probable receptor-like protein kinase At5g47070-like [Cicer arietinum] gi|502152552|ref|XP_004508979.1| chr0 20771290 20775478 +
2 domain predictions
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Lj0g3v0063059.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g28960-like [Glycine max] gi|356565948|ref|XP_003551197.1| chr0 21276027 21279326 +
2 domain predictions
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Lj0g3v0065639.2
n.a. PREDICTED: somatic embryogenesis receptor kinase 1-like [Glycine max] gi|356576127|ref|XP_003556185.1| chr0 22860880 22867426 -
2 domain predictions
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Lj0g3v0067799.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 25-like [Glycine max] gi|356575773|ref|XP_003556011.1| chr0 24129425 24131578 -
2 domain predictions
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Lj0g3v0067799.2
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 25-like [Glycine max] gi|356575773|ref|XP_003556011.1| chr0 24129425 24131578 -
2 domain predictions
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Lj0g3v0069359.1
n.a. cold-induced wall associated kinase, partial [Ammopiptanthus mongolicus] gi|115432146|gb|ABI97350.1| chr0 25036388 25037162 +
2 domain predictions
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Lj0g3v0070679.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357438781|ref|XP_003589667.1| chr0 25811146 25814698 -
2 domain predictions
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Lj0g3v0070679.2
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357438781|ref|XP_003589667.1| chr0 25811744 25814698 -
2 domain predictions
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Lj0g3v0070679.3
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357438781|ref|XP_003589667.1| chr0 25812952 25814698 -
2 domain predictions
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Lj0g3v0072519.1
n.a. PREDICTED: protein kinase APK1B, chloroplastic-like [Glycine max] gi|356506672|ref|XP_003522100.1| chr0 26909470 26914375 -
2 domain predictions
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Lj0g3v0073629.1
n.a. PREDICTED: probable L-type lectin-domain containing receptor kinase S.5-like [Glycine max] gi|356498420|ref|XP_003518050.1| chr0 27656698 27659079 +
3 domain predictions
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Lj0g3v0075369.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Cicer arietinum] gi|502135214|ref|XP_004502257.1| chr0 28565917 28573472 +
2 domain predictions
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Lj0g3v0075699.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|358346449|ref|XP_003637280.1| chr0 28803126 28805909 +
2 domain predictions
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Lj0g3v0083519.1
n.a. PREDICTED: probable receptor-like protein kinase At5g15080-like [Cicer arietinum] gi|502155065|ref|XP_004509947.1| chr0 33105730 33108989 +
2 domain predictions
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Lj0g3v0084029.1
n.a. PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 2-like [Cicer arietinum] gi|502136069|ref|XP_004502549.1| chr0 33421371 33426989 +
2 domain predictions
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Lj0g3v0084889.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK12-like [Glycine max] gi|356524047|ref|XP_003530644.1| chr0 33875098 33875616 +
2 domain predictions
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Lj0g3v0086719.1
n.a. PREDICTED: somatic embryogenesis receptor kinase 4-like [Glycine max] gi|356559929|ref|XP_003548248.1| chr0 35046088 35050220 -
2 domain predictions
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Lj0g3v0088019.1
n.a. Lectin receptor-like kinase Tg-20 [Medicago truncatula] gi|357517167|ref|XP_003628872.1| chr0 35898490 35900862 -
3 domain predictions
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Lj0g3v0090399.1
n.a. Protein kinase-like protein [Medicago truncatula] gi|357491539|ref|XP_003616057.1| chr0 37230407 37231665 +
2 domain predictions
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Lj0g3v0096479.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|358347873|ref|XP_003637975.1| chr0 40687117 40695302 +
2 domain predictions
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Lj0g3v0100779.1
n.a. PREDICTED: U-box domain-containing protein 33-like [Glycine max] gi|356522608|ref|XP_003529938.1| chr0 42633753 42636749 -
2 domain predictions
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Lj0g3v0100779.2
n.a. PREDICTED: U-box domain-containing protein 33-like [Glycine max] gi|356522608|ref|XP_003529938.1| chr0 42633753 42636749 -
2 domain predictions
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Lj0g3v0102179.1
n.a. PREDICTED: lysM domain receptor-like kinase 4-like [Cicer arietinum] gi|502123143|ref|XP_004498011.1| chr0 43416814 43418351 +
2 domain predictions
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Lj0g3v0106439.3
n.a. PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770-like [Glycine max] gi|356523826|ref|XP_003530535.1| chr0 45775767 45777138 -
2 domain predictions
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Lj0g3v0108759.1
n.a. Kinase-like protein [Medicago truncatula] gi|357521441|ref|XP_003631009.1| chr0 47065607 47067858 +
2 domain predictions
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Lj0g3v0110369.1
n.a. PREDICTED: receptor like protein kinase S.2-like [Glycine max] gi|356527258|ref|XP_003532229.1| chr0 47861972 47862370 +
2 domain predictions
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Lj0g3v0112109.1
n.a. Chain A, Lotus Tetragonolobus Seed Lectin (Isoform)gi|169404520|pdb|2EIG|B Chain B, Lotus Tetragonolobus Seed Lectin (Isoform)gi|169404521|pdb|2EIG|C Chain C, Lotus Tetragonolobus Seed Lectin (Isoform)gi|169404522|pdb|2EIG|D Chain D, Lotus Tetragonolobus Seed Lectin (Isoform)] gi|169404519|pdb|2EIG|A chr0 48759957 48760857 +
3 domain predictions
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Lj0g3v0112879.2
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like isoform X1 [Cicer arietinum] gi|502166659|ref|XP_004513949.1| chr0 49268904 49272257 +
2 domain predictions
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Lj0g3v0113159.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 29-like [Glycine max] gi|356575757|ref|XP_003556003.1| chr0 49397392 49401058 -
2 domain predictions
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Lj0g3v0113169.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 25-like [Glycine max] gi|356575773|ref|XP_003556011.1| chr0 49402115 49406125 -
2 domain predictions
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Lj0g3v0115159.1
n.a. PREDICTED: probable receptor-like protein kinase At4g39110-like [Glycine max] gi|356542359|ref|XP_003539634.1| chr0 50578610 50582102 -
2 domain predictions
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Lj0g3v0115709.1
n.a. PREDICTED: probable inactive receptor kinase At5g58300-like [Glycine max] gi|356537708|ref|XP_003537367.1| chr0 50859370 50863385 +
2 domain predictions
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Lj0g3v0116419.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK4-like isoform X3 [Cicer arietinum] gi|502153183|ref|XP_004509247.1| chr0 51221672 51225411 +
2 domain predictions
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Lj0g3v0129549.1
n.a. Calpain-like protein [Medicago truncatula] gi|357519297|ref|XP_003629937.1| chr0 58630780 58633904 +
3 domain predictions
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Lj0g3v0130739.1
n.a. Kinase-like protein [Medicago truncatula] gi|357514029|ref|XP_003627303.1| chr0 59358855 59359466 -
2 domain predictions
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Lj0g3v0132429.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] gi|356514903|ref|XP_003526141.1| chr0 60436549 60444443 +
2 domain predictions
 –