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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR015063
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

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Download the entire search result as a CSV file.

We have found 5 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.336s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0164349.1
n.a. STAM-binding protein [Medicago truncatula] gi|357500307|ref|XP_003620442.1| chr0 77842362 77846770 +
2 domain predictions
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Lj2g3v0721190.1
n.a. STAM-binding protein [Medicago truncatula] gi|357500307|ref|XP_003620442.1| chr2 11416541 11421476 -
2 domain predictions
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LotjaGi2g1v0205500.1
n.a. AMSH-like ubiquitin thioesterase 1; TAIR: AT1G48790.1 associated molecule with the SH3 domain of STAM 1; Swiss-Prot: sp|Q8VYB5|AMSH1_ARATH AMSH-like ubiquitin thioesterase 1; TrEMBL-Plants: tr|A0A0H4LWA1|A0A0H4LWA1_LOTJA Associated molecule with the SH3 domain of STAM 1; Found in the gene: LotjaGi2g1v0205500 LjG1.1_chr2 64885168 64896299 -
2 domain predictions
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LotjaGi2g1v0205500.2
n.a. AMSH-like ubiquitin thioesterase 1; TAIR: AT1G48790.1 associated molecule with the SH3 domain of STAM 1; Swiss-Prot: sp|Q8VYB5|AMSH1_ARATH AMSH-like ubiquitin thioesterase 1; TrEMBL-Plants: tr|A0A0H4LWA1|A0A0H4LWA1_LOTJA Associated molecule with the SH3 domain of STAM 1; Found in the gene: LotjaGi2g1v0205500 LjG1.1_chr2 64885290 64891862 -
2 domain predictions
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LotjaGi4g1v0336100.1
n.a. AMSH-like ubiquitin thioesterase 1; TAIR: AT4G16144.1 associated molecule with the SH3 domain of STAM 3; Swiss-Prot: sp|Q5PNU3|AMSH3_ARATH AMSH-like ubiquitin thioesterase 3; TrEMBL-Plants: tr|A0A151ST25|A0A151ST25_CAJCA ESCRT I complex subunit sst2; Found in the gene: LotjaGi4g1v0336100 LjG1.1_chr4 71641876 71649001 +
2 domain predictions
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