Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR015424
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 379 results. Now displaying 1 of 8 with 50 rows per page. This search has taken 5.697s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0016659.1
n.a. PREDICTED: 8-amino-7-oxononanoate synthase-like [Glycine max] gi|356517746|ref|XP_003527547.1| chr0 6432502 6456406 +
2 domain predictions
 –
Lj0g3v0064019.1
n.a. PREDICTED: probable aminotransferase TAT2-like isoform X1 [Cicer arietinum] gi|502082746|ref|XP_004487261.1| chr0 21891829 21893866 -
2 domain predictions
 –
Lj0g3v0064019.2
n.a. PREDICTED: probable aminotransferase TAT2-like isoform X1 [Cicer arietinum] gi|502082746|ref|XP_004487261.1| chr0 21895817 21898199 -
2 domain predictions
 –
Lj0g3v0083999.1
n.a. PREDICTED: aspartate aminotransferase, mitochondrial-like [Cicer arietinum] gi|502143818|ref|XP_004505477.1| chr0 33417737 33418460 +
2 domain predictions
 –
Lj0g3v0084619.1
n.a. Histidine decarboxylase [Medicago truncatula] gi|357443697|ref|XP_003592126.1| chr0 33700083 33702156 +
2 domain predictions
 –
Lj0g3v0091189.1
n.a. serine palmitoyltransferase [Lotus japonicus] gi|27753609|dbj|BAC55228.1| chr0 37724437 37733874 +
2 domain predictions
 –
Lj0g3v0103639.1
n.a. PREDICTED: probable cysteine desulfurase-like [Glycine max] gi|356511174|ref|XP_003524304.1| chr0 44206869 44208626 +
2 domain predictions
 –
Lj0g3v0108489.1
n.a. PREDICTED: methionine gamma-lyase-like [Cicer arietinum] gi|502116597|ref|XP_004495508.1| chr0 46900619 46904625 +
2 domain predictions
 –
Lj0g3v0131109.1
n.a. PREDICTED: isopenicillin N epimerase-like [Glycine max] gi|356533487|ref|XP_003535295.1| chr0 59640298 59641998 -
2 domain predictions
 –
Lj0g3v0135249.1
n.a. PREDICTED: aminotransferase YbdL-like [Glycine max] gi|356515870|ref|XP_003526620.1| chr0 62100612 62101630 +
2 domain predictions
 –
Lj0g3v0135259.1
n.a. Kynurenine-oxoglutarate transaminase [Medicago truncatula] gi|357461581|ref|XP_003601072.1| chr0 62101605 62102846 +
2 domain predictions
 –
Lj0g3v0182009.1
n.a. PREDICTED: acetylornithine aminotransferase, mitochondrial-like [Glycine max] gi|356520746|ref|XP_003529021.1| chr0 88878795 88882416 +
2 domain predictions
 –
Lj0g3v0196759.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508720920|gb|EOY12817.1| chr0 95958660 95963229 +
2 domain predictions
 –
Lj0g3v0196759.2
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508720920|gb|EOY12817.1| chr0 95958660 95963229 +
2 domain predictions
 –
Lj0g3v0209349.1
n.a. PREDICTED: 8-amino-7-oxononanoate synthase-like [Glycine max] gi|356517746|ref|XP_003527547.1| chr0 104954159 104967411 -
2 domain predictions
 –
Lj0g3v0209699.1
n.a. PREDICTED: histidine decarboxylase-like [Glycine max] gi|356534053|ref|XP_003535572.1| chr0 105189788 105192122 +
2 domain predictions
 –
Lj0g3v0210649.1
n.a. PREDICTED: probable aminotransferase ACS12-like [Glycine max] gi|356529344|ref|XP_003533255.1| chr0 105964544 105967633 -
2 domain predictions
 –
Lj0g3v0211149.1
n.a. PREDICTED: tyrosine/DOPA decarboxylase 2-like [Glycine max] gi|356522542|ref|XP_003529905.1| chr0 106312143 106313663 -
2 domain predictions
 –
Lj0g3v0225599.1
n.a. PREDICTED: probable cysteine desulfurase-like [Glycine max] gi|356511172|ref|XP_003524303.1| chr0 116438646 116440888 +
2 domain predictions
 –
Lj0g3v0243559.1
n.a. 1-aminocyclopropane-1-carboxylic acid synthase [Vigna radiata] gi|5231127|gb|AAD41083.1|AF151961_1 chr0 126342901 126344819 +
2 domain predictions
 –
Lj0g3v0266309.1
n.a. Serine palmitoyltransferase [Medicago truncatula] gi|357490955|ref|XP_003615765.1| chr0 137879358 137887728 -
2 domain predictions
 –
Lj0g3v0279699.1
n.a. PREDICTED: ornithine aminotransferase, mitochondrial-like [Cicer arietinum] gi|502141592|ref|XP_004504557.1| chr0 145168951 145169940 +
2 domain predictions
 –
Lj0g3v0279709.1
n.a. n.a. chr0 145168951 145169940 +
2 domain predictions
 –
Lj0g3v0279719.1
n.a. PREDICTED: probable ornithine aminotransferase-like, partial [Cucumis sativus] gi|449533799|ref|XP_004173859.1| chr0 145169887 145171086 +
2 domain predictions
 –
Lj0g3v0279729.1
n.a. Ornithine-delta-aminotransferase isoform 1 [Theobroma cacao] gi|508780402|gb|EOY27658.1| chr0 145171033 145171931 +
2 domain predictions
 –
Lj0g3v0279739.1
n.a. n.a. chr0 145171033 145171931 +
2 domain predictions
 –
Lj0g3v0279749.1
n.a. ornithine aminotransferase [Glycine max] gi|351727128|ref|NP_001237150.1| chr0 145171878 145174523 +
2 domain predictions
 –
Lj0g3v0303129.1
n.a. cystathionine gamma-synthase [Lens culinaris] gi|430736216|gb|AGA60137.1| chr0 157766000 157776076 +
2 domain predictions
 –
Lj0g3v0303129.2
n.a. Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Arabidopsis thaliana] gi|15217498|ref|NP_174600.1| chr0 157766000 157776076 +
2 domain predictions
 –
Lj0g3v0303129.3
n.a. cystathionine gamma-synthase [Lens culinaris] gi|430736216|gb|AGA60137.1| chr0 157766000 157776076 +
2 domain predictions
 –
Lj0g3v0303129.4
n.a. Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi|5822271|pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi|5822272|pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi|5822273|pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi|5822274|pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi|5822275|pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi|5822276|pdb|1QGN|G Ch chr0 157766321 157776076 +
2 domain predictions
 –
Lj0g3v0308209.1
n.a. PREDICTED: histidine decarboxylase-like [Glycine max] gi|356534053|ref|XP_003535572.1| chr0 160897742 160899794 -
2 domain predictions
 –
Lj0g3v0308209.2
n.a. PREDICTED: histidine decarboxylase-like [Glycine max] gi|356534053|ref|XP_003535572.1| chr0 160897742 160899794 -
2 domain predictions
 –
Lj0g3v0315589.1
n.a. PREDICTED: histidine decarboxylase-like [Glycine max] gi|356534053|ref|XP_003535572.1| chr0 164728885 164730589 -
2 domain predictions
 –
Lj0g3v0330309.1
n.a. PREDICTED: isopenicillin N epimerase-like isoform 1 [Glycine max] gi|356572890|ref|XP_003554598.1| chr0 172634798 172637729 -
2 domain predictions
 –
Lj0g3v0349269.1
n.a. PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cicer arietinum] gi|502169960|ref|XP_004514725.1| chr0 183364386 183376510 -
2 domain predictions
 –
Lj0g3v0349269.2
n.a. PREDICTED: cystathionine beta-lyase, chloroplastic-like [Glycine max] gi|356571951|ref|XP_003554134.1| chr0 183364386 183372519 -
2 domain predictions
 –
Lj1g3v0173680.1
n.a. PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Glycine max] gi|356500779|ref|XP_003519208.1| chr1 1954305 1961167 -
2 domain predictions
 –
Lj1g3v0173680.2
n.a. Serine hydroxymethyltransferase [Medicago truncatula] gi|357490157|ref|XP_003615366.1| chr1 1954305 1961167 -
2 domain predictions
 –
Lj1g3v0318800.1
n.a. Alliin lyase [Medicago truncatula] gi|357461859|ref|XP_003601211.1| chr1 3981892 3994920 -
2 domain predictions
 –
Lj1g3v0318800.2
n.a. Alliin lyase [Medicago truncatula] gi|357461859|ref|XP_003601211.1| chr1 3981892 3994920 -
2 domain predictions
 –
Lj1g3v0329870.1
n.a. Alliin lyase [Medicago truncatula] gi|357461859|ref|XP_003601211.1| chr1 4021460 4021762 -
2 domain predictions
 –
Lj1g3v0652040.1
n.a. AGD2-like defense response protein 1 [Theobroma cacao] gi|508724214|gb|EOY16111.1| chr1 8482742 8484063 -
2 domain predictions
 –
Lj1g3v0738020.1
n.a. Serine hydroxymethyltransferase [Medicago truncatula] gi|357461719|ref|XP_003601141.1| chr1 9687121 9690781 -
2 domain predictions
 –
Lj1g3v0785940.1
n.a. PREDICTED: probable N-succinyldiaminopimelate aminotransferase DapC-like [Cicer arietinum] gi|502126699|ref|XP_004499406.1| chr1 10354727 10357530 +
2 domain predictions
 –
Lj1g3v0786110.1
n.a. PREDICTED: probable N-succinyldiaminopimelate aminotransferase DapC-like [Cicer arietinum] gi|502126699|ref|XP_004499406.1| chr1 10410374 10412839 +
2 domain predictions
 –
Lj1g3v1318130.1
n.a. Cysteine desulfurase [Medicago truncatula] gi|357519939|ref|XP_003630258.1| chr1 15927964 15930718 +
2 domain predictions
 –
Lj1g3v1478280.1
n.a. PREDICTED: L-allo-threonine aldolase-like [Glycine max] gi|356576676|ref|XP_003556456.1| chr1 17599923 17602205 -
2 domain predictions
 –
Lj1g3v1478280.2
n.a. PREDICTED: L-allo-threonine aldolase-like [Glycine max] gi|356576676|ref|XP_003556456.1| chr1 17600213 17602205 -
2 domain predictions
 –
Lj1g3v1478280.3
n.a. PREDICTED: L-allo-threonine aldolase-like [Glycine max] gi|356576676|ref|XP_003556456.1| chr1 17600469 17602205 -
2 domain predictions
 –