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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR019557
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 178 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 5.741s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0003689.1
n.a. OSJNBa0021F22.14 [Oryza sativa Japonica Group] gi|38346481|emb|CAE03720.2| chr0 1304386 1312484 -
2 domain predictions
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Lj0g3v0006569.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502087782|ref|XP_004488641.1| chr0 2534638 2535111 +
2 domain predictions
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Lj0g3v0014829.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502152368|ref|XP_004508894.1| chr0 5696781 5700738 +
2 domain predictions
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Lj0g3v0024149.1
n.a. aminotransferase-like protein [Oryza sativa Japonica Group] gi|47497844|dbj|BAD19973.1| chr0 9619041 9623191 +
2 domain predictions
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Lj0g3v0035889.1
n.a. n.a. chr0 11396865 11410103 -
2 domain predictions
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Lj0g3v0044479.1
n.a. Hypothetical protein [Oryza sativa Japonica Group] gi|21671905|gb|AAM74267.1|AC083943_7 chr0 14671030 14672253 +
2 domain predictions
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Lj0g3v0048479.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502167456|ref|XP_004514146.1| chr0 16309170 16310326 -
2 domain predictions
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Lj0g3v0078819.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog, partial [Cucumis sativus] gi|449533480|ref|XP_004173702.1| chr0 30395232 30395873 -
2 domain predictions
 –
Lj0g3v0079149.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Glycine max] gi|356570471|ref|XP_003553410.1| chr0 30581424 30582134 -
2 domain predictions
 –
Lj0g3v0088809.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Fragaria vesca subsp]. vesca] gi|470111066|ref|XP_004291774.1| chr0 36374359 36376610 -
2 domain predictions
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Lj0g3v0168019.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502179171|ref|XP_004516383.1| chr0 80021143 80023655 +
2 domain predictions
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Lj0g3v0259699.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502146985|ref|XP_004506684.1| chr0 134976116 134977194 +
2 domain predictions
 –
Lj0g3v0276129.1
n.a. n.a. chr0 143227125 143235323 +
2 domain predictions
 –
Lj0g3v0276139.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Vitis vinifera] gi|225445619|ref|XP_002262668.1| chr0 143231028 143232884 -
2 domain predictions
 –
Lj0g3v0280039.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502121366|ref|XP_004497288.1| chr0 145246336 145249850 -
2 domain predictions
 –
Lj0g3v0283569.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog, partial [Cucumis sativus] gi|449533480|ref|XP_004173702.1| chr0 146986306 146986788 +
2 domain predictions
 –
Lj0g3v0293719.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502159977|ref|XP_004511593.1| chr0 152543381 152544589 -
2 domain predictions
 –
Lj0g3v0311939.1
n.a. Aminotransferase-like, plant mobile domain family protein [Arabidopsis thaliana] gi|15238856|ref|NP_197352.1| chr0 162821943 162822188 +
2 domain predictions
 –
Lj0g3v0311949.1
n.a. Aminotransferase-like, plant mobile domain family protein [Arabidopsis thaliana] gi|145324899|ref|NP_001077696.1| chr0 162822268 162823540 +
2 domain predictions
 –
Lj0g3v0318299.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502146985|ref|XP_004506684.1| chr0 166222656 166223138 +
2 domain predictions
 –
Lj0g3v0345379.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Solanum lycopersicum] gi|460388037|ref|XP_004239678.1| chr0 181197171 181201228 +
2 domain predictions
 –
Lj0g3v0345379.2
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog, partial [Cucumis sativus] gi|449533480|ref|XP_004173702.1| chr0 181197171 181201228 +
2 domain predictions
 –
Lj1g3v0244510.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502089330|ref|XP_004488876.1| chr1 2371800 2372360 -
2 domain predictions
 –
Lj1g3v0948630.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502085781|ref|XP_004488005.1| chr1 11933230 11935757 -
2 domain predictions
 –
Lj1g3v1182180.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502165116|ref|XP_004513424.1| chr1 14465717 14467751 +
2 domain predictions
 –
Lj1g3v1387010.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502091721|ref|XP_004489618.1| chr1 17095493 17096926 +
2 domain predictions
 –
Lj1g3v1526030.1
n.a. serine/threonine-protein phosphatase 7 long form homolog [Arabidopsis thaliana] gi|334183132|ref|NP_175246.2| chr1 18153001 18155781 +
2 domain predictions
 –
Lj1g3v1526030.2
n.a. serine/threonine-protein phosphatase 7 long form homolog [Arabidopsis thaliana] gi|334183132|ref|NP_175246.2| chr1 18154063 18155781 +
2 domain predictions
 –
Lj1g3v1526300.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502165116|ref|XP_004513424.1| chr1 18295853 18296678 -
2 domain predictions
 –
Lj1g3v1820960.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502086817|ref|XP_004488336.1| chr1 22245848 22247104 -
2 domain predictions
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Lj1g3v2580940.1
n.a. n.a. chr1 29624297 29631427 -
2 domain predictions
 –
Lj1g3v2608030.1
n.a. serine/threonine-protein phosphatase 7 long form homolog [Arabidopsis thaliana] gi|334183132|ref|NP_175246.2| chr1 29999617 30001963 +
2 domain predictions
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Lj1g3v2611380.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Glycine max] gi|356570471|ref|XP_003553410.1| chr1 30207306 30207638 -
2 domain predictions
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Lj1g3v2809370.1
n.a. aminotransferase-like, plant mobile domain family protein [Arabidopsis thaliana] gi|22328697|ref|NP_193340.2| chr1 31996852 31998760 +
2 domain predictions
 –
Lj1g3v4338970.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Glycine max] gi|356570471|ref|XP_003553410.1| chr1 50994121 50994448 +
2 domain predictions
 –
Lj1g3v4752700.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502089330|ref|XP_004488876.1| chr1 56788069 56788523 -
2 domain predictions
 –
Lj1g3v4875740.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502086734|ref|XP_004488309.1| chr1 59214598 59215570 -
2 domain predictions
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Lj2g3v1277630.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502167456|ref|XP_004514146.1| chr2 20392449 20393420 -
2 domain predictions
 –
Lj2g3v1378990.1
n.a. calcineurin-like phosphoesterase [Glycine max] gi|225016137|gb|ACN78961.1| chr2 21840529 21845759 -
2 domain predictions
 –
Lj2g3v1550610.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502152368|ref|XP_004508894.1| chr2 24797153 24799865 +
2 domain predictions
 –
Lj2g3v2902530.2
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502149407|ref|XP_004507515.1| chr2 37840353 37849860 +
2 domain predictions
 –
Lj2g3v2902540.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502149407|ref|XP_004507515.1| chr2 37843864 37849860 +
2 domain predictions
 –
Lj2g3v2904960.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502152048|ref|XP_004508738.1| chr2 37998505 38001050 -
2 domain predictions
 –
Lj2g3v3139180.1
n.a. Aminotransferase-like, plant mobile domain family protein [Arabidopsis thaliana] gi|15238856|ref|NP_197352.1| chr2 40556290 40557022 +
2 domain predictions
 –
Lj2g3v3139190.1
n.a. aminotransferase-like, plant mobile domain family protein [Arabidopsis thaliana] gi|15223656|ref|NP_175497.1| chr2 40557389 40558051 +
2 domain predictions
 –
Lj3g3v0948480.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Fragaria vesca subsp]. vesca] gi|470139049|ref|XP_004305264.1| chr3 11721010 11721618 -
2 domain predictions
 –
Lj3g3v1666240.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502146424|ref|XP_004506448.1| chr3 21468048 21469103 -
2 domain predictions
 –
Lj3g3v2054350.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog, partial [Cicer arietinum] gi|502183304|ref|XP_004517108.1| chr3 26352320 26353262 +
2 domain predictions
 –
Lj3g3v3236510.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum] gi|502089330|ref|XP_004488876.1| chr3 39830542 39830996 +
2 domain predictions
 –
Lj4g3v0510150.1
n.a. Ulp1 protease family C-terminal catalytic domain containing protein [Medicago truncatula] gi|357505667|ref|XP_003623122.1| chr4 8669303 8672546 +
2 domain predictions
 –