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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR020459
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 4 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.410s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj4g3v2580340.1
n.a. Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid CoA ligase [Medicago truncatula] gi|357518659|ref|XP_003629618.1| chr4 34665477 34673954 +
2 domain predictions
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LotjaGi3g1v0367300.1
n.a. Malonate--CoA ligase; TAIR: AT3G16170.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp|Q8H151|AAE13_ARATH Malonate--CoA ligase; TrEMBL-Plants: tr|A0A0B2SSI6|A0A0B2SSI6_GLYSO Malonate--CoA ligase; Found in the gene: LotjaGi3g1v0367300 LjG1.1_chr3 75337883 75347965 +
2 domain predictions
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LotjaGi6g1v0041800.2
n.a. Long-chain-fatty-acid CoA ligase, putative; TAIR: AT3G23790.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp|Q9LK39|AAE16_ARATH Probable acyl-activating enzyme 16, chloroplastic; TrEMBL-Plants: tr|G7JAT4|G7JAT4_MEDTR Long-chain-fatty-acid CoA ligase (AMP-forming); Found in the gene: LotjaGi6g1v0041800 LjG1.1_chr6 8006954 8015315 -
2 domain predictions
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LotjaGi6g1v0041800.3
n.a. Long-chain-fatty-acid CoA ligase, putative; TAIR: AT3G23790.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp|Q9LK39|AAE16_ARATH Probable acyl-activating enzyme 16, chloroplastic; TrEMBL-Plants: tr|G7JAT4|G7JAT4_MEDTR Long-chain-fatty-acid CoA ligase (AMP-forming); Found in the gene: LotjaGi6g1v0041800 LjG1.1_chr6 8006954 8017255 -
2 domain predictions
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