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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR021094
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 9 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.516s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v3073980.1
n.a. PREDICTED: regulatory protein NPR3-like [Glycine max] gi|356553915|ref|XP_003545296.1| chr2 39563157 39571182 +
2 domain predictions
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Lj2g3v3073980.2
n.a. PREDICTED: regulatory protein NPR3-like [Glycine max] gi|356553915|ref|XP_003545296.1| chr2 39565751 39571182 +
2 domain predictions
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Lj6g3v1692500.1
n.a. NPR1-1 protein [Glycine max] gi|351726319|ref|NP_001238658.1| chr6 18835132 18841561 +
2 domain predictions
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LotjaGi1g1v0045800.1
n.a. Regulatory protein NPR1; TAIR: AT5G45110.1 NPR1-like protein 3; Swiss-Prot: sp|Q0JJ01|NPR2_ORYSJ BTB/POZ domain and ankyrin repeat-containing protein NPR2; TrEMBL-Plants: tr|I1M705|I1M705_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0045800 LjG1.1_chr1 6271139 6280773 -
2 domain predictions
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LotjaGi6g1v0230400_LC.1
n.a. Ankyrin repeat-containing protein; TAIR: AT1G64280.1 regulatory protein (NPR1); Swiss-Prot: sp|Q5D0W8|NPR1_ORYSI BTB/POZ domain and ankyrin repeat-containing protein NPR1; TrEMBL-Plants: tr|A0A151T5F3|A0A151T5F3_CAJCA Regulatory protein NPR1; Found in the gene: LotjaGi6g1v0230400_LC LjG1.1_chr6 53926322 53927684 +
2 domain predictions
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LotjaGi6g1v0230400_LC.2
n.a. Ankyrin repeat-containing protein; TAIR: AT1G64280.1 regulatory protein (NPR1); Swiss-Prot: sp|Q5D0W8|NPR1_ORYSI BTB/POZ domain and ankyrin repeat-containing protein NPR1; TrEMBL-Plants: tr|A0A0R0IBM0|A0A0R0IBM0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0230400_LC LjG1.1_chr6 53926322 53928798 +
2 domain predictions
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LotjaGi6g1v0275700.1
n.a. Regulatory protein NPR1; TAIR: AT5G45110.1 NPR1-like protein 3; Swiss-Prot: sp|Q8L746|NPR3_ARATH Regulatory protein NPR3; TrEMBL-Plants: tr|B8XQT5|B8XQT5_SOYBN NPR1-1 protein; Found in the gene: LotjaGi6g1v0275700 LjG1.1_chr6 59254853 59265161 +
2 domain predictions
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LotjaGi6g1v0275700.2
n.a. Regulatory protein NPR1; TAIR: AT5G45110.2 NPR1-like protein 3; Swiss-Prot: sp|Q8L746|NPR3_ARATH Regulatory protein NPR3; TrEMBL-Plants: tr|A0A151REX1|A0A151REX1_CAJCA Regulatory protein NPR1; Found in the gene: LotjaGi6g1v0275700 LjG1.1_chr6 59260691 59264123 +
2 domain predictions
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LotjaGi6g1v0275700.3
n.a. Regulatory protein NPR1; TAIR: AT5G45110.1 NPR1-like protein 3; Swiss-Prot: sp|Q8L746|NPR3_ARATH Regulatory protein NPR3; TrEMBL-Plants: tr|B8XQT5|B8XQT5_SOYBN NPR1-1 protein; Found in the gene: LotjaGi6g1v0275700 LjG1.1_chr6 59260691 59264646 +
2 domain predictions
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