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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR023591
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 12 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.263s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0055359.1
n.a. PREDICTED: UTP--glucose-1-phosphate uridylyltransferase-like [Cicer arietinum] gi|502130616|ref|XP_004500712.1| chr0 17850852 17863416 -
2 domain predictions
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Lj3g3v0937870.1
n.a. PREDICTED: 40S ribosomal protein SA-like [Cicer arietinum] gi|502136969|ref|XP_004502915.1| chr3 11306296 11309159 -
2 domain predictions
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Lj3g3v2575940.1
n.a. PREDICTED: 40S ribosomal protein SA-like [Cicer arietinum] gi|502136998|ref|XP_004502927.1| chr3 31461072 31462880 -
2 domain predictions
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Lj3g3v2575940.2
n.a. PREDICTED: 40S ribosomal protein SA-like [Cicer arietinum] gi|502136998|ref|XP_004502927.1| chr3 31461072 31462880 -
2 domain predictions
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Lj4g3v2655220.1
n.a. PREDICTED: 40S ribosomal protein SA-like [Fragaria vesca subsp]. vesca] gi|470101196|ref|XP_004287064.1| chr4 36030864 36031041 +
2 domain predictions
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Lj4g3v2655230.1
n.a. PREDICTED: 40S ribosomal protein SA-like [Cicer arietinum] gi|502136998|ref|XP_004502927.1| chr4 36031119 36032160 +
2 domain predictions
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Ljchlorog3v0000410.1
n.a. ribosomal protein S2 [Lotus japonicus] gi|13518439|ref|NP_084799.1| chloro 44952 45662 +
2 domain predictions
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LotjaGi1g1v0557100.1
n.a. 30S ribosomal S2; TAIR: AT3G03250.1 UDP-GLUCOSE PYROPHOSPHORYLASE 1; Swiss-Prot: sp|Q9SDX3|UGPA_MUSAC UTP--glucose-1-phosphate uridylyltransferase; TrEMBL-Plants: tr|Q2PEV2|Q2PEV2_TRIPR Putative UDP-glucose pyrophosphorylase; Found in the gene: LotjaGi1g1v0557100 LjG1.1_chr1 108892964 108901481 -
2 domain predictions
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LotjaGi3g1v0130900.1
n.a. 40S ribosomal protein SA; TAIR: AT3G04770.2 40s ribosomal protein SA B; Swiss-Prot: sp|O65751|RSSA_CICAR 40S ribosomal protein SA; TrEMBL-Plants: tr|A0A151QSB7|A0A151QSB7_CAJCA 40S ribosomal protein SA; Found in the gene: LotjaGi3g1v0130900 LjG1.1_chr3 16343230 16346260 -
2 domain predictions
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LotjaGi3g1v0409500.1
n.a. 40S ribosomal protein SA; TAIR: AT3G04770.2 40s ribosomal protein SA B; Swiss-Prot: sp|O65751|RSSA_CICAR 40S ribosomal protein SA; TrEMBL-Plants: tr|A0A1J7HDL8|A0A1J7HDL8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0409500 LjG1.1_chr3 81336014 81338462 -
2 domain predictions
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LotjaGi3g1v0409500.2
n.a. 40S ribosomal protein SA; TAIR: AT3G04770.2 40s ribosomal protein SA B; Swiss-Prot: sp|O65751|RSSA_CICAR 40S ribosomal protein SA; TrEMBL-Plants: tr|A0A1J7HDL8|A0A1J7HDL8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0409500 LjG1.1_chr3 81336279 81338344 -
2 domain predictions
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LotjaGi3g1v0409500.3
n.a. 40S ribosomal protein SA; TAIR: AT3G04770.1 40s ribosomal protein SA B; Swiss-Prot: sp|O22518|RSSA_SOYBN 40S ribosomal protein SA; TrEMBL-Plants: tr|A0A0R0FJR0|A0A0R0FJR0_SOYBN 40S ribosomal protein SA; Found in the gene: LotjaGi3g1v0409500 LjG1.1_chr3 81337276 81338285 -
2 domain predictions
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