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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR023753
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We have found 223 results. Now displaying 1 of 5 with 50 rows per page. This search has taken 6.116s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0018789.1
n.a. PREDICTED: thioredoxin reductase 2-like [Glycine max] gi|356561017|ref|XP_003548782.1| chr0 7397213 7400094 +
4 domain predictions
2 GO terms
Lj0g3v0049079.1
n.a. PREDICTED: NADPH-dependent thioredoxin reductase 3-like [Cicer arietinum] gi|502166343|ref|XP_004513864.1| chr0 16575249 16581584 +
4 domain predictions
2 GO terms
Lj0g3v0049079.2
n.a. PREDICTED: NADPH-dependent thioredoxin reductase 3-like [Cicer arietinum] gi|502166343|ref|XP_004513864.1| chr0 16575249 16582924 +
4 domain predictions
2 GO terms
Lj0g3v0049159.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA2-like [Glycine max] gi|356511355|ref|XP_003524392.1| chr0 16619511 16622163 +
3 domain predictions
2 GO terms
Lj0g3v0049349.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA2-like [Glycine max] gi|356529622|ref|XP_003533388.1| chr0 16742786 16746402 +
3 domain predictions
2 GO terms
Lj0g3v0055279.1
n.a. PREDICTED: zeta-carotene desaturase, chloroplastic/chromoplastic-like isoform X1 [Cicer arietinum] gi|502117333|ref|XP_004495784.1| chr0 17810891 17822168 -
2 domain predictions
2 GO terms
Lj0g3v0062149.1
n.a. PREDICTED: monodehydroascorbate reductase [Glycine max] gi|356577825|ref|XP_003557022.1| chr0 20855242 20855791 +
2 domain predictions
2 GO terms
Lj0g3v0062999.1
n.a. PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Cicer arietinum] gi|502160849|ref|XP_004511928.1| chr0 21255660 21261996 -
3 domain predictions
2 GO terms
Lj0g3v0063329.1
n.a. RecName: Full=Long-chain-alcohol oxidase FAO1; AltName: Full=Long-chain fatty alcohol oxidase 1gi|209570220|emb|CAP15762.1| long chain fatty alcohol oxidase FAO1 [Lotus japonicus] gi|300680944|sp|B5WWZ8.1|FAO1_LOTJA chr0 21462686 21466786 +
3 domain predictions
2 GO terms
Lj0g3v0063339.1
n.a. RecName: Full=Long-chain-alcohol oxidase FAO1; AltName: Full=Long-chain fatty alcohol oxidase 1gi|209570220|emb|CAP15762.1| long chain fatty alcohol oxidase FAO1 [Lotus japonicus] gi|300680944|sp|B5WWZ8.1|FAO1_LOTJA chr0 21462978 21466631 +
3 domain predictions
2 GO terms
Lj0g3v0064569.1
n.a. PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2-like [Glycine max] gi|356559400|ref|XP_003547987.1| chr0 22347260 22351106 -
3 domain predictions
2 GO terms
Lj0g3v0085899.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA3-like [Glycine max] gi|356533385|ref|XP_003535245.1| chr0 34509104 34512194 +
3 domain predictions
2 GO terms
Lj0g3v0087419.1
n.a. PREDICTED: phytoene dehydrogenase, chloroplastic/chromoplastic-like [Cicer arietinum] gi|502135246|ref|XP_004502268.1| chr0 35534946 35547074 +
3 domain predictions
2 GO terms
Lj0g3v0087419.4
n.a. phytoene desaturase [Pisum sativum] gi|41222521|emb|CAF21337.1| chr0 35536165 35547074 +
3 domain predictions
2 GO terms
Lj0g3v0101099.1
n.a. Dimethylaniline monooxygenase [Medicago truncatula] gi|357436843|ref|XP_003588697.1| chr0 42816185 42818337 -
3 domain predictions
2 GO terms
Lj0g3v0114829.1
n.a. PREDICTED: protein HOTHEAD-like [Glycine max] gi|356514078|ref|XP_003525734.1| chr0 50379374 50384257 -
3 domain predictions
2 GO terms
Lj0g3v0115209.1
n.a. Dehydrosqualene desaturase [Medicago truncatula] gi|357514935|ref|XP_003627756.1| chr0 50606707 50618759 -
2 domain predictions
2 GO terms
Lj0g3v0115209.2
n.a. PREDICTED: flavin-containing monooxygenase FMO GS-OX5-like [Cicer arietinum] gi|502158040|ref|XP_004511006.1| chr0 50606707 50618095 -
2 domain predictions
2 GO terms
Lj0g3v0115209.3
n.a. PREDICTED: flavin-containing monooxygenase FMO GS-OX5-like [Cicer arietinum] gi|502158040|ref|XP_004511006.1| chr0 50609231 50618162 -
3 domain predictions
2 GO terms
Lj0g3v0115209.4
n.a. PREDICTED: flavin-containing monooxygenase FMO GS-OX5-like [Cicer arietinum] gi|502158040|ref|XP_004511006.1| chr0 50613495 50617419 -
2 domain predictions
2 GO terms
Lj0g3v0118129.1
n.a. PREDICTED: 6-hydroxynicotinate 3-monooxygenase-like [Glycine max] gi|356536384|ref|XP_003536718.1| chr0 52207114 52209982 +
3 domain predictions
2 GO terms
Lj0g3v0118149.1
n.a. PREDICTED: 6-hydroxynicotinate 3-monooxygenase-like [Glycine max] gi|356536384|ref|XP_003536718.1| chr0 52210391 52210884 +
3 domain predictions
2 GO terms
Lj0g3v0132519.1
n.a. PREDICTED: probable NADH dehydrogenase-like [Glycine max] gi|356566086|ref|XP_003551266.1| chr0 60481147 60486135 +
4 domain predictions
2 GO terms
Lj0g3v0162379.1
n.a. PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10-like [Cicer arietinum] gi|502137320|ref|XP_004503045.1| chr0 76558290 76558976 +
3 domain predictions
2 GO terms
Lj0g3v0166979.1
n.a. PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2-like isoform X1 [Cicer arietinum] gi|502100498|ref|XP_004491733.1| chr0 79404303 79408319 +
4 domain predictions
2 GO terms
Lj0g3v0180989.1
n.a. Bifunctional protein aas [Medicago truncatula] gi|357454395|ref|XP_003597478.1| chr0 88213484 88215632 +
3 domain predictions
2 GO terms
Lj0g3v0180989.2
n.a. Bifunctional protein aas [Medicago truncatula] gi|357454395|ref|XP_003597478.1| chr0 88214859 88215632 +
3 domain predictions
2 GO terms
Lj0g3v0205559.1
n.a. Bifunctional protein aas [Medicago truncatula] gi|357454395|ref|XP_003597478.1| chr0 102262923 102270182 +
3 domain predictions
2 GO terms
Lj0g3v0205839.1
n.a. Lysine-specific histone demethylase-like protein [Medicago truncatula] gi|357438195|ref|XP_003589373.1| chr0 102471086 102476956 -
2 domain predictions
2 GO terms
Lj0g3v0210279.1
n.a. PREDICTED: capsanthin/capsorubin synthase, chromoplast-like [Glycine max] gi|356547120|ref|XP_003541965.1| chr0 105656332 105658304 -
3 domain predictions
2 GO terms
Lj0g3v0219209.1
n.a. n.a. chr0 111956583 111963390 -
3 domain predictions
2 GO terms
Lj0g3v0220659.1
n.a. PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9-like [Cicer arietinum] gi|502178463|ref|XP_004516260.1| chr0 113055335 113059729 +
3 domain predictions
2 GO terms
Lj0g3v0220669.1
n.a. PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9-like [Cicer arietinum] gi|502178463|ref|XP_004516260.1| chr0 113055335 113059863 +
3 domain predictions
2 GO terms
Lj0g3v0226769.1
n.a. PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 3-like [Glycine max] gi|356548911|ref|XP_003542842.1| chr0 117160481 117162765 -
3 domain predictions
2 GO terms
Lj0g3v0231639.1
n.a. PREDICTED: lycopene beta cyclase, chloroplastic-like [Glycine max] gi|356504708|ref|XP_003521137.1| chr0 120146910 120148530 -
3 domain predictions
2 GO terms
Lj0g3v0236509.1
n.a. FAD-dependent oxidoreductase family protein [Theobroma cacao] gi|508699655|gb|EOX91551.1| chr0 122597544 122598865 -
3 domain predictions
2 GO terms
Lj0g3v0241619.1
n.a. PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA3-like [Cicer arietinum] gi|502122410|ref|XP_004497732.1| chr0 125364516 125367628 -
3 domain predictions
2 GO terms
Lj0g3v0244869.1
n.a. PREDICTED: lysine-specific histone demethylase 1 homolog 3-like isoform X1 [Cicer arietinum] gi|502141466|ref|XP_004504519.1| chr0 126980869 126987527 +
2 domain predictions
2 GO terms
Lj0g3v0245759.1
n.a. PREDICTED: prolycopene isomerase, chloroplastic-like [Cicer arietinum] gi|502122189|ref|XP_004497623.1| chr0 127422968 127430366 -
3 domain predictions
2 GO terms
Lj0g3v0254949.1
n.a. PREDICTED: LOW QUALITY PROTEIN: glutamate synthase [NADH] gi|502124343|ref|XP_004498486.1| chr0 132375698 132377798 -
4 domain predictions
2 GO terms
Lj0g3v0254949.2
n.a. PREDICTED: LOW QUALITY PROTEIN: glutamate synthase [NADH] gi|502124343|ref|XP_004498486.1| chr0 132375698 132378780 -
4 domain predictions
2 GO terms
Lj0g3v0267429.1
n.a. PREDICTED: squalene monooxygenase-like [Glycine max] gi|356569981|ref|XP_003553171.1| chr0 138558838 138563099 +
3 domain predictions
2 GO terms
Lj0g3v0267429.3
n.a. PREDICTED: squalene monooxygenase-like [Glycine max] gi|356569981|ref|XP_003553171.1| chr0 138558838 138563099 +
3 domain predictions
2 GO terms
Lj0g3v0267429.4
n.a. PREDICTED: squalene monooxygenase-like [Glycine max] gi|356569981|ref|XP_003553171.1| chr0 138558838 138563099 +
3 domain predictions
2 GO terms
Lj0g3v0268179.1
n.a. PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2-like [Glycine max] gi|356498359|ref|XP_003518020.1| chr0 138871884 138873927 +
2 domain predictions
2 GO terms
Lj0g3v0276659.1
n.a. PREDICTED: protoporphyrinogen oxidase, chloroplastic-like [Cicer arietinum] gi|502117534|ref|XP_004495854.1| chr0 143579012 143583214 +
2 domain predictions
2 GO terms
Lj0g3v0276659.2
n.a. PREDICTED: protoporphyrinogen oxidase, chloroplastic-like [Cicer arietinum] gi|502117534|ref|XP_004495854.1| chr0 143579419 143581974 +
2 domain predictions
2 GO terms
Lj0g3v0292939.1
n.a. PREDICTED: squalene monooxygenase-like [Glycine max] gi|356521261|ref|XP_003529275.1| chr0 152033266 152035629 -
3 domain predictions
2 GO terms
Lj0g3v0292949.1
n.a. PREDICTED: squalene monooxygenase-like [Glycine max] gi|356521261|ref|XP_003529275.1| chr0 152037404 152037809 -
3 domain predictions
2 GO terms
Lj0g3v0294379.1
n.a. PREDICTED: ubiquinone biosynthesis monooxygenase COQ6-like isoform X1 [Cicer arietinum] gi|502103130|ref|XP_004492209.1| chr0 152967226 152973346 -
3 domain predictions
2 GO terms