Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR025312
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 21 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.293s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0042359.1
n.a. TNP2 [Glycine max] gi|254971800|gb|ACT98135.1| chr0 13904144 13906689 +
2 domain predictions
 –
Lj0g3v0111519.1
n.a. OSJNBa0067G20.12 [Oryza sativa Japonica Group] gi|38345113|emb|CAD40476.2| chr0 48455260 48457029 -
2 domain predictions
 –
Lj0g3v0346739.1
n.a. TNP2 [Medicago truncatula] gi|357521667|ref|XP_003631122.1| chr0 181869080 181870195 -
2 domain predictions
 –
Lj5g3v1003780.1
n.a. TdcA1-ORF1-ORF2 protein [Medicago truncatula] gi|357450519|ref|XP_003595536.1| chr5 15943349 15943742 +
2 domain predictions
 –
LotjaGi1g1v0142800_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT4G37900.1 hypothetical protein (duplicated DUF1399); Swiss-Prot: sp|Q9SZJ2|GRDP2_ARATH Glycine-rich domain-containing protein 2; TrEMBL-Plants: tr|A0A151ST96|A0A151ST96_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0142800_LC LjG1.1_chr1 23660657 23662547 +
2 domain predictions
 –
LotjaGi1g1v0162400_LC.3
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT2G25070.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|A1TXB6|COBQ_MARHV Cobyric acid synthase; TrEMBL-Plants: tr|A0A151QLA5|A0A151QLA5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0162400_LC LjG1.1_chr1 30535221 30544298 +
2 domain predictions
 –
LotjaGi1g1v0162400_LC.5
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT4G37900.1 hypothetical protein (duplicated DUF1399); Swiss-Prot: sp|A6NJ88|SGE2P_HUMAN Putative SAGE1-like protein; TrEMBL-Plants: tr|A0A151ST96|A0A151ST96_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0162400_LC LjG1.1_chr1 30535221 30544298 +
2 domain predictions
 –
LotjaGi1g1v0217200_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT4G34430.1 DNA-binding family protein; Swiss-Prot: sp|Q5XGI3|FBXL5_XENTR F-box/LRR-repeat protein 5; TrEMBL-Plants: tr|A0A151RB78|A0A151RB78_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0217200_LC LjG1.1_chr1 47964603 47965061 -
2 domain predictions
 –
LotjaGi1g1v0294100_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT4G18270.1 translocase 11; Swiss-Prot: sp|O47499|CYB_METSE Cytochrome b; TrEMBL-Plants: tr|A0A1J6KHX4|A0A1J6KHX4_NICAT Uncharacterized protein; Found in the gene: LotjaGi1g1v0294100_LC LjG1.1_chr1 71317878 71325748 -
2 domain predictions
 –
LotjaGi1g1v0294100_LC.3
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; Swiss-Prot: sp|O47499|CYB_METSE Cytochrome b; TrEMBL-Plants: tr|B8AH04|B8AH04_ORYSI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0294100_LC LjG1.1_chr1 71317878 71325748 -
2 domain predictions
 –
LotjaGi1g1v0294100_LC.7
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT4G18270.1 translocase 11; Swiss-Prot: sp|O47499|CYB_METSE Cytochrome b; TrEMBL-Plants: tr|A0A1J6KHX4|A0A1J6KHX4_NICAT Uncharacterized protein; Found in the gene: LotjaGi1g1v0294100_LC LjG1.1_chr1 71318147 71325734 -
2 domain predictions
 –
LotjaGi1g1v0294100_LC.8
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; Swiss-Prot: sp|O47499|CYB_METSE Cytochrome b; TrEMBL-Plants: tr|B8AH04|B8AH04_ORYSI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0294100_LC LjG1.1_chr1 71318147 71325734 -
2 domain predictions
 –
LotjaGi2g1v0121700_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G09950.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950; TrEMBL-Plants: tr|Q948N8|Q948N8_DAUCA TdcA1-ORF1-ORF2 protein; Found in the gene: LotjaGi2g1v0121700_LC LjG1.1_chr2 44903110 44904900 +
2 domain predictions
 –
LotjaGi2g1v0188400_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT5G01820.1 serine/threonine protein kinase 1; Swiss-Prot: sp|A6H694|LRC63_MOUSE Leucine-rich repeat-containing protein 63; TrEMBL-Plants: tr|A0A151QLA5|A0A151QLA5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0188400_LC LjG1.1_chr2 61806017 61815149 +
2 domain predictions
 –
LotjaGi2g1v0188400_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT5G01820.1 serine/threonine protein kinase 1; Swiss-Prot: sp|A6H694|LRC63_MOUSE Leucine-rich repeat-containing protein 63; TrEMBL-Plants: tr|A0A151QLA5|A0A151QLA5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0188400_LC LjG1.1_chr2 61806135 61815069 +
2 domain predictions
 –
LotjaGi2g1v0188400_LC.3
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT5G01820.1 serine/threonine protein kinase 1; Swiss-Prot: sp|A6H694|LRC63_MOUSE Leucine-rich repeat-containing protein 63; TrEMBL-Plants: tr|A0A151QLA5|A0A151QLA5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0188400_LC LjG1.1_chr2 61806135 61815069 +
2 domain predictions
 –
LotjaGi4g1v0260800_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT4G18270.1 translocase 11; Swiss-Prot: sp|O47499|CYB_METSE Cytochrome b; TrEMBL-Plants: tr|Q0JIZ7|Q0JIZ7_ORYSJ protein; Found in the gene: LotjaGi4g1v0260800_LC LjG1.1_chr4 61860145 61864848 +
2 domain predictions
 –
LotjaGi4g1v0260800_LC.3
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT4G18270.1 translocase 11; Swiss-Prot: sp|O47499|CYB_METSE Cytochrome b; TrEMBL-Plants: tr|Q0JIZ7|Q0JIZ7_ORYSJ protein; Found in the gene: LotjaGi4g1v0260800_LC LjG1.1_chr4 61860280 61865339 +
2 domain predictions
 –
LotjaGi4g1v0260800_LC.4
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT4G18270.1 translocase 11; Swiss-Prot: sp|O47499|CYB_METSE Cytochrome b; TrEMBL-Plants: tr|A0A1J6KHX4|A0A1J6KHX4_NICAT Uncharacterized protein; Found in the gene: LotjaGi4g1v0260800_LC LjG1.1_chr4 61860280 61865339 +
2 domain predictions
 –
LotjaGi5g1v0185900_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G29410.2 phosphoribosylanthranilate isomerase 3; Swiss-Prot: sp|Q32RY3|RPOC1_STAPU DNA-directed RNA polymerase subunit beta'; TrEMBL-Plants: tr|A0A151RB78|A0A151RB78_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0185900_LC LjG1.1_chr5 47266689 47267625 -
2 domain predictions
 –
LotjaGi5g1v0281600_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT4G37900.1 hypothetical protein (duplicated DUF1399); Swiss-Prot: sp|Q5UP41|YR871_MIMIV Uncharacterized protein R871; TrEMBL-Plants: tr|A0A151ST96|A0A151ST96_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0281600_LC LjG1.1_chr5 59779058 59779721 -
2 domain predictions
 –