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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR025846
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 144 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 6.400s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0023649.1
n.a. Trichome birefringence-like 19 [Theobroma cacao] gi|508712433|gb|EOY04330.1| chr0 9446238 9448512 +
2 domain predictions
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Lj0g3v0023809.1
n.a. Trichome birefringence-like 19 [Theobroma cacao] gi|508712433|gb|EOY04330.1| chr0 9521641 9524780 -
2 domain predictions
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Lj0g3v0040539.1
n.a. Trichome birefringence-like 18 isoform 1 [Theobroma cacao] gi|508775713|gb|EOY22969.1| chr0 13215889 13217278 -
2 domain predictions
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Lj0g3v0069069.1
n.a. CCP [Medicago truncatula] gi|357492809|ref|XP_003616693.1| chr0 24827592 24836109 -
2 domain predictions
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Lj0g3v0076049.1
n.a. Trichome birefringence-like 27 [Theobroma cacao] gi|508708544|gb|EOY00441.1| chr0 28956769 28959373 +
2 domain predictions
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Lj0g3v0076069.1
n.a. leaf senescence protein-like [Oryza sativa Japonica Group] gi|51535124|dbj|BAD37787.1| chr0 28964272 28970694 +
2 domain predictions
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Lj0g3v0076959.1
n.a. trichome birefringence-like 43 protein [Arabidopsis thaliana] gi|334184595|ref|NP_180647.2| chr0 29431048 29434170 +
2 domain predictions
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Lj0g3v0076989.1
n.a. trichome birefringence-like 43 protein [Arabidopsis thaliana] gi|334184595|ref|NP_180647.2| chr0 29447242 29453256 +
2 domain predictions
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Lj0g3v0079179.1
n.a. Trichome birefringence-like 39 [Theobroma cacao] gi|508702319|gb|EOX94215.1| chr0 30605765 30610415 +
2 domain predictions
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Lj0g3v0094779.1
n.a. Trichome birefringence-like 15 isoform 2 [Theobroma cacao] gi|508700702|gb|EOX92598.1| chr0 39845265 39849485 +
2 domain predictions
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Lj0g3v0151129.1
n.a. Trichome birefringence-like 19 [Theobroma cacao] gi|508712433|gb|EOY04330.1| chr0 70432824 70435098 -
2 domain predictions
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Lj0g3v0168049.1
n.a. Trichome birefringence-like 7 isoform 2 [Theobroma cacao] gi|508724723|gb|EOY16620.1| chr0 80032731 80034073 -
2 domain predictions
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Lj0g3v0188469.1
n.a. GRAS family transcription factor [Medicago truncatula] gi|357457039|ref|XP_003598800.1| chr0 92134862 92135182 +
2 domain predictions
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Lj0g3v0190049.1
n.a. Trichome birefringence-like 27 [Theobroma cacao] gi|508708544|gb|EOY00441.1| chr0 92861232 92869492 +
2 domain predictions
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Lj0g3v0194729.1
n.a. Trichome birefringence-like 27 [Theobroma cacao] gi|508708544|gb|EOY00441.1| chr0 94977428 94980235 -
2 domain predictions
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Lj0g3v0246779.1
n.a. Trichome birefringence-like 27 [Theobroma cacao] gi|508708544|gb|EOY00441.1| chr0 127905690 127907627 -
2 domain predictions
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Lj0g3v0258249.1
n.a. Trichome birefringence-like 27 [Theobroma cacao] gi|508708544|gb|EOY00441.1| chr0 134093884 134095290 -
2 domain predictions
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Lj0g3v0292629.1
n.a. Trichome birefringence-like 19 [Theobroma cacao] gi|508712433|gb|EOY04330.1| chr0 151890315 151893327 -
2 domain predictions
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Lj0g3v0309039.1
n.a. Uncharacterized protein TCM_021670 [Theobroma cacao] gi|508715266|gb|EOY07163.1| chr0 161413308 161416375 -
2 domain predictions
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Lj0g3v0316379.1
n.a. GRAS family transcription factor [Medicago truncatula] gi|357457039|ref|XP_003598800.1| chr0 165197805 165202984 +
2 domain predictions
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Lj0g3v0334689.3
n.a. Uncharacterized protein TCM_021670 [Theobroma cacao] gi|508715266|gb|EOY07163.1| chr0 175226692 175229381 +
2 domain predictions
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Lj0g3v0337019.1
n.a. Trichome birefringence-like 42 [Theobroma cacao] gi|508721581|gb|EOY13478.1| chr0 176493599 176496135 -
2 domain predictions
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Lj0g3v0355939.2
n.a. Trichome birefringence-like 27 [Theobroma cacao] gi|508708544|gb|EOY00441.1| chr0 187502676 187504549 +
2 domain predictions
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Lj1g3v1318100.1
n.a. Trichome birefringence-like 7 [Theobroma cacao] gi|508700595|gb|EOX92491.1| chr1 15917195 15920808 +
2 domain predictions
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Lj1g3v2373690.1
n.a. Trichome birefringence-like 35 isoform 1 [Theobroma cacao] gi|508715191|gb|EOY07088.1| chr1 28008146 28015665 +
2 domain predictions
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Lj1g3v2375860.1
n.a. Trichome birefringence-like 34 [Theobroma cacao] gi|508715193|gb|EOY07090.1| chr1 28040606 28043209 +
2 domain predictions
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Lj1g3v2834940.1
n.a. Trichome birefringence-like 41 [Theobroma cacao] gi|508721578|gb|EOY13475.1| chr1 32191732 32196230 +
2 domain predictions
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Lj1g3v3115200.1
n.a. Trichome birefringence-like 19 [Theobroma cacao] gi|508712433|gb|EOY04330.1| chr1 35393425 35398772 +
2 domain predictions
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Lj1g3v3115210.1
n.a. Trichome birefringence-like 19 [Theobroma cacao] gi|508712433|gb|EOY04330.1| chr1 35400509 35403480 +
2 domain predictions
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Lj1g3v4350070.1
n.a. trichome birefringence [Arabidopsis thaliana] gi|297614182|gb|ADI48429.1| chr1 51152811 51155491 -
2 domain predictions
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Lj1g3v4421050.1
n.a. Trichome birefringence-like 11 isoform 1 [Theobroma cacao] gi|508713671|gb|EOY05568.1| chr1 51555542 51561531 +
2 domain predictions
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Lj1g3v4862650.1
n.a. Trichome birefringence-like 6 [Theobroma cacao] gi|508703370|gb|EOX95266.1| chr1 58775258 58779171 -
2 domain predictions
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Lj1g3v5034550.1
n.a. Trichome birefringence-like 25 isoform 1 [Theobroma cacao] gi|508703864|gb|EOX95760.1| chr1 61431058 61432780 +
2 domain predictions
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Lj2g3v1019780.2
n.a. protein trichome birefringence-like 22 [Arabidopsis thaliana] gi|15232914|ref|NP_189454.1| chr2 15766041 15768816 -
2 domain predictions
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Lj2g3v1377590.1
n.a. Trichome birefringence-like 27 [Theobroma cacao] gi|508708544|gb|EOY00441.1| chr2 21685138 21686654 +
2 domain predictions
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Lj2g3v1377600.1
n.a. Trichome birefringence-like 27 [Theobroma cacao] gi|508708544|gb|EOY00441.1| chr2 21685140 21686774 +
2 domain predictions
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Lj2g3v1377630.1
n.a. Trichome birefringence-like 27 [Theobroma cacao] gi|508708544|gb|EOY00441.1| chr2 21688899 21691365 +
2 domain predictions
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Lj2g3v1377650.1
n.a. Trichome birefringence-like 27 [Theobroma cacao] gi|508708544|gb|EOY00441.1| chr2 21692674 21694371 +
2 domain predictions
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Lj2g3v1377660.1
n.a. Trichome birefringence-like 27 [Theobroma cacao] gi|508708544|gb|EOY00441.1| chr2 21696938 21699254 +
2 domain predictions
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Lj2g3v1378700.1
n.a. Trichome birefringence-like 27 [Theobroma cacao] gi|508708544|gb|EOY00441.1| chr2 21708379 21710063 -
2 domain predictions
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Lj2g3v1378710.1
n.a. Trichome birefringence-like 27 [Theobroma cacao] gi|508708544|gb|EOY00441.1| chr2 21713464 21715333 +
2 domain predictions
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Lj2g3v1415120.1
n.a. Uncharacterized protein TCM_010432 [Theobroma cacao] gi|508708646|gb|EOY00543.1| chr2 22297471 22299972 +
2 domain predictions
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Lj2g3v2290610.1
n.a. Uncharacterized protein TCM_041593 [Theobroma cacao] gi|508786434|gb|EOY33690.1| chr2 33329554 33333317 +
2 domain predictions
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Lj2g3v2759020.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508725852|gb|EOY17749.1| chr2 36512145 36529638 +
2 domain predictions
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Lj2g3v2828840.1
n.a. CCP [Medicago truncatula] gi|357492809|ref|XP_003616693.1| chr2 36924503 36927341 +
2 domain predictions
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Lj3g3v2416360.1
n.a. Trichome birefringence-like 25 isoform 2 [Theobroma cacao] gi|508703865|gb|EOX95761.1| chr3 29929881 29932727 +
2 domain predictions
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Lj3g3v2848900.1
n.a. Trichome birefringence-like 39 [Theobroma cacao] gi|508702319|gb|EOX94215.1| chr3 35104057 35108368 -
2 domain predictions
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Lj4g3v0409470.1
n.a. Gb:AAD15463.1 isoform 1 [Theobroma cacao] gi|508705417|gb|EOX97313.1| chr4 5213828 5217654 +
2 domain predictions
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Lj4g3v0412750.1
n.a. trichome birefringence-like 13 protein [Arabidopsis thaliana] gi|15225951|ref|NP_179059.1| chr4 5426183 5430419 +
2 domain predictions
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Lj4g3v0506860.1
n.a. Trichome birefringence-like 37 isoform 1 [Theobroma cacao] gi|508780783|gb|EOY28039.1| chr4 8474331 8479630 -
2 domain predictions
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