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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR028021
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 7 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.950s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0101279.1
n.a. PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog 1-like [Glycine max] gi|356549389|ref|XP_003543076.1| chr0 42938991 42941268 -
2 domain predictions
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Lj2g3v0915090.1
n.a. PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog 1-like [Glycine max] gi|356573375|ref|XP_003554837.1| chr2 14451259 14470299 +
2 domain predictions
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LotjaGi2g1v0236500.1
n.a. Katanin p80 WD40 repeat-containing subunit B1 homolog; TAIR: AT5G08390.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog; TrEMBL-Plants: tr|K7MVR8|K7MVR8_SOYBN Katanin p80 WD40 repeat-containing subunit B1 homolog; Found in the gene: LotjaGi2g1v0236500 LjG1.1_chr2 69742140 69764898 +
2 domain predictions
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LotjaGi2g1v0236500.2
n.a. Katanin p80 WD40 repeat-containing subunit B1 homolog; TAIR: AT5G08390.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog; TrEMBL-Plants: tr|K7MVR8|K7MVR8_SOYBN Katanin p80 WD40 repeat-containing subunit B1 homolog; Found in the gene: LotjaGi2g1v0236500 LjG1.1_chr2 69742241 69761424 +
2 domain predictions
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LotjaGi2g1v0236500.3
n.a. Katanin p80 WD40 repeat-containing subunit B1 homolog; TAIR: AT5G23430.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog; TrEMBL-Plants: tr|K7MVR8|K7MVR8_SOYBN Katanin p80 WD40 repeat-containing subunit B1 homolog; Found in the gene: LotjaGi2g1v0236500 LjG1.1_chr2 69742915 69760744 +
2 domain predictions
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LotjaGi2g1v0236500.4
n.a. Katanin p80 WD40 repeat-containing subunit B1 homolog; TAIR: AT5G08390.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog; TrEMBL-Plants: tr|K7MVR8|K7MVR8_SOYBN Katanin p80 WD40 repeat-containing subunit B1 homolog; Found in the gene: LotjaGi2g1v0236500 LjG1.1_chr2 69742915 69760744 +
2 domain predictions
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LotjaGi6g1v0336900.1
n.a. Katanin p80 WD40 repeat-containing subunit B1 homolog; TAIR: AT1G61210.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog; TrEMBL-Plants: tr|G7ILH1|G7ILH1_MEDTR Katanin p80 WD40 repeat-containing subunit B1 homolog; Found in the gene: LotjaGi6g1v0336900 LjG1.1_chr6 65126456 65145010 +
2 domain predictions
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