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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029060
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 42 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.888s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0043809.1
n.a. PREDICTED: LOW QUALITY PROTEIN: DNA repair protein UVH3-like [Glycine max] gi|356498232|ref|XP_003517957.1| chr0 14389290 14400508 +
3 domain predictions
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Lj0g3v0109039.1
n.a. C2H2-like zinc finger protein isoform 2 [Theobroma cacao] gi|508722500|gb|EOY14397.1| chr0 47160325 47161316 +
2 domain predictions
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Lj0g3v0233619.1
n.a. PREDICTED: 5'-3' exonuclease-like [Glycine max] gi|356561357|ref|XP_003548949.1| chr0 120981456 120981733 +
2 domain predictions
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Lj0g3v0324239.1
n.a. PREDICTED: rRNA-processing protein FCF1 homolog [Glycine max] gi|356543662|ref|XP_003540279.1| chr0 169454590 169460782 -
3 domain predictions
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Lj0g3v0345639.1
n.a. Limkain-b1 [Medicago truncatula] gi|357511719|ref|XP_003626148.1| chr0 181314778 181315405 +
2 domain predictions
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Lj1g3v1255830.1
n.a. Limkain-b1 [Medicago truncatula] gi|357464505|ref|XP_003602534.1| chr1 15154668 15161375 -
2 domain predictions
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Lj1g3v2624840.1
n.a. Flap endonuclease GEN-like protein [Medicago truncatula] gi|357507117|ref|XP_003623847.1| chr1 30401263 30407172 -
3 domain predictions
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Lj1g3v4806340.1
n.a. Limkain-b1 [Medicago truncatula] gi|357511719|ref|XP_003626148.1| chr1 57912714 57916019 +
2 domain predictions
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Lj1g3v5021220.1
n.a. PREDICTED: rRNA-processing protein FCF1 homolog [Glycine max] gi|356543662|ref|XP_003540279.1| chr1 61275877 61279781 -
3 domain predictions
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Lj2g3v0216900.1
n.a. Parallel spindle [Medicago truncatula] gi|357443427|ref|XP_003591991.1| chr2 3744430 3750683 +
2 domain predictions
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Lj2g3v0286920.1
n.a. PREDICTED: flap endonuclease GEN-like 2-like [Cicer arietinum] gi|502175270|ref|XP_004515700.1| chr2 4847045 4861167 +
3 domain predictions
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Lj3g3v3326010.1
n.a. Zinc finger family protein [Theobroma cacao] gi|508777217|gb|EOY24473.1| chr3 40497670 40499572 -
2 domain predictions
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Lj3g3v3326020.1
n.a. Zinc finger family protein [Theobroma cacao] gi|508777217|gb|EOY24473.1| chr3 40498031 40499572 -
2 domain predictions
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Lj4g3v2628750.1
n.a. PREDICTED: exonuclease 1-like [Cicer arietinum] gi|502140539|ref|XP_004504251.1| chr4 35784169 35789301 -
3 domain predictions
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Lj5g3v0290680.1
n.a. C2H2-like zinc finger protein isoform 2 [Theobroma cacao] gi|508722500|gb|EOY14397.1| chr5 2543762 2546009 -
2 domain predictions
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Lj5g3v1533400.1
n.a. PREDICTED: flap endonuclease 1-like isoform X3 [Cicer arietinum] gi|502117445|ref|XP_004495823.1| chr5 22465034 22470380 +
3 domain predictions
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Lj5g3v1533400.3
n.a. PREDICTED: flap endonuclease 1-like isoform X3 [Cicer arietinum] gi|502117445|ref|XP_004495823.1| chr5 22465974 22470380 +
3 domain predictions
 –
LotjaGi1g1v0061000.1
n.a. rRNA-processing protein PIN domain protein; TAIR: AT2G34570.1 PIN domain-like family protein; Swiss-Prot: sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog; TrEMBL-Plants: tr|A0A0R0G9Y3|A0A0R0G9Y3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0061000 LjG1.1_chr1 8544636 8549438 +
2 domain predictions
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LotjaGi1g1v0061000.2
n.a. rRNA-processing protein PIN domain protein; TAIR: AT2G34570.1 PIN domain-like family protein; Swiss-Prot: sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog; TrEMBL-Plants: tr|A0A0R0G9Y3|A0A0R0G9Y3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0061000 LjG1.1_chr1 8544792 8549708 +
2 domain predictions
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LotjaGi1g1v0469700.1
n.a. Flap endonuclease 1; TAIR: AT1G01880.1 5'-3' exonuclease family protein; Swiss-Prot: sp|Q64MA3|GENL1_ORYSJ Flap endonuclease GEN-like 1; TrEMBL-Plants: tr|A2Q3P8|A2Q3P8_MEDTR Flap endonuclease GEN-like protein; Found in the gene: LotjaGi1g1v0469700 LjG1.1_chr1 98017113 98023253 -
2 domain predictions
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LotjaGi1g1v0605700.1
n.a. Flap endonuclease 1; TAIR: AT3G28030.1 5'-3' exonuclease family protein; Swiss-Prot: sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3; TrEMBL-Plants: tr|K7K2I9|K7K2I9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0605700 LjG1.1_chr1 115056088 115068169 -
2 domain predictions
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LotjaGi1g1v0605700.2
n.a. Flap endonuclease 1; TAIR: AT3G28030.1 5'-3' exonuclease family protein; Swiss-Prot: sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3; TrEMBL-Plants: tr|K7K2I9|K7K2I9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0605700 LjG1.1_chr1 115056088 115068169 -
2 domain predictions
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LotjaGi1g1v0605700.3
n.a. Flap endonuclease 1; TAIR: AT3G28030.1 5'-3' exonuclease family protein; Swiss-Prot: sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3; TrEMBL-Plants: tr|K7K2I9|K7K2I9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0605700 LjG1.1_chr1 115056314 115067438 -
2 domain predictions
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LotjaGi1g1v0788500.1
n.a. rRNA-processing protein FCF1-like protein; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0788500 LjG1.1_chr1 136107144 136112287 -
2 domain predictions
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LotjaGi1g1v0788500.2
n.a. rRNA-processing protein FCF1-like protein; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0788500 LjG1.1_chr1 136107264 136112178 -
2 domain predictions
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LotjaGi2g1v0098200.1
n.a. 5'-3' exonuclease; TAIR: AT1G34380.2 5'-3' exonuclease family protein; Swiss-Prot: sp|O67550|EX53_AQUAE 5'-3' exonuclease; TrEMBL-Plants: tr|K7MHK5|K7MHK5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0098200 LjG1.1_chr2 32089881 32108363 -
2 domain predictions
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LotjaGi2g1v0144600.1
n.a. Flap endonuclease 1; TAIR: AT3G48900.2 single-stranded DNA endonuclease family protein; Swiss-Prot: sp|Q9M2Z3|GENL2_ARATH Flap endonuclease GEN-like 2; TrEMBL-Plants: tr|K7MIH1|K7MIH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0144600 LjG1.1_chr2 52367265 52382060 -
2 domain predictions
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LotjaGi2g1v0199500_LC.1
n.a. Flap endonuclease 1; TAIR: AT1G18090.1 5'-3' exonuclease family protein; Swiss-Prot: sp|Q54ED2|EXO1_DICDI Exonuclease 1; TrEMBL-Plants: tr|V4TWE1|V4TWE1_9ROSI Uncharacterized protein; Found in the gene: LotjaGi2g1v0199500_LC LjG1.1_chr2 63559205 63564197 -
2 domain predictions
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LotjaGi2g1v0199500_LC.2
n.a. Flap endonuclease 1; TAIR: AT1G18090.1 5'-3' exonuclease family protein; Swiss-Prot: sp|Q54ED2|EXO1_DICDI Exonuclease 1; TrEMBL-Plants: tr|V4TWE1|V4TWE1_9ROSI Uncharacterized protein; Found in the gene: LotjaGi2g1v0199500_LC LjG1.1_chr2 63559256 63564153 -
2 domain predictions
 –
LotjaGi3g1v0178700.1
n.a. rRNA-processing protein FCF1 like; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0178700 LjG1.1_chr3 24909353 24916744 -
2 domain predictions
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LotjaGi3g1v0178700.2
n.a. rRNA-processing protein FCF1 like; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0178700 LjG1.1_chr3 24909353 24916744 -
2 domain predictions
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LotjaGi3g1v0178700.3
n.a. rRNA-processing protein FCF1-like protein; TAIR: AT1G26530.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0178700 LjG1.1_chr3 24910845 24915089 -
2 domain predictions
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LotjaGi3g1v0178700.4
n.a. rRNA-processing protein FCF1 like; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|A0A151TXS1|A0A151TXS1_CAJCA rRNA-processing protein FCF1 isogeny; Found in the gene: LotjaGi3g1v0178700 LjG1.1_chr3 24910845 24915089 -
2 domain predictions
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LotjaGi4g1v0069300.1
n.a. Flap endonuclease Xni; TAIR: AT3G52050.1 5'-3' exonuclease family protein; Swiss-Prot: sp|O52225|DPO1_THEFI DNA polymerase I, thermostable; TrEMBL-Plants: tr|A0A0S3R340|A0A0S3R340_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0069300 LjG1.1_chr4 8744166 8755534 +
2 domain predictions
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LotjaGi4g1v0138200.1
n.a. DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp|Q9SHL7|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr|A0A0B2R0N8|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200 LjG1.1_chr4 20529003 20555632 +
2 domain predictions
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LotjaGi4g1v0138200.2
n.a. DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp|Q9SHL7|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr|A0A0B2R0N8|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200 LjG1.1_chr4 20529555 20554784 +
2 domain predictions
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LotjaGi4g1v0138200.3
n.a. DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp|Q9SHL7|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr|A0A0B2R0N8|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200 LjG1.1_chr4 20529555 20554784 +
2 domain predictions
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LotjaGi4g1v0138200.4
n.a. DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp|Q9SHL7|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr|A0A0B2R0N8|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200 LjG1.1_chr4 20529555 20554784 +
2 domain predictions
 –
LotjaGi4g1v0138200.5
n.a. DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp|Q9SHL7|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr|A0A0B2R0N8|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200 LjG1.1_chr4 20530031 20554784 +
2 domain predictions
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LotjaGi4g1v0382400.1
n.a. Flap endonuclease 1; TAIR: AT1G29630.2 5'-3' exonuclease family protein; Swiss-Prot: sp|Q60GC1|EXO1_ORYSJ Exonuclease 1; TrEMBL-Plants: tr|K7L667|K7L667_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382400 LjG1.1_chr4 76113003 76118224 -
2 domain predictions
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LotjaGi5g1v0234800.1
n.a. Flap endonuclease 1; TAIR: AT5G26680.2 5'-3' exonuclease family protein; Swiss-Prot: sp|C6TEX6|FEN1_SOYBN Flap endonuclease 1; TrEMBL-Plants: tr|I3SAA1|I3SAA1_LOTJA Flap endonuclease 1; Found in the gene: LotjaGi5g1v0234800 LjG1.1_chr5 54290965 54296544 +
2 domain predictions
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LotjaGi5g1v0234800.2
n.a. Flap endonuclease 1; TAIR: AT5G26680.3 5'-3' exonuclease family protein; Swiss-Prot: sp|C6TEX6|FEN1_SOYBN Flap endonuclease 1; TrEMBL-Plants: tr|A0A072VM97|A0A072VM97_MEDTR Flap endonuclease 1; Found in the gene: LotjaGi5g1v0234800 LjG1.1_chr5 54291033 54296495 +
2 domain predictions
 –