Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029480
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 35 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.992s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0125179.1
n.a. TNP2 [Antirrhinum majus] gi|1345502|emb|CAA40555.1| chr0 56183209 56185214 +
2 domain predictions
 –
Lj0g3v0125189.1
n.a. TNP2 [Antirrhinum majus] gi|1345502|emb|CAA40555.1| chr0 56183209 56185049 +
2 domain predictions
 –
Lj0g3v0289679.4
n.a. TNP2 [Medicago truncatula] gi|357517859|ref|XP_003629218.1| chr0 150426223 150428449 -
2 domain predictions
 –
Lj1g3v2264840.1
n.a. TNP2 [Antirrhinum majus] gi|1345502|emb|CAA40555.1| chr1 26544838 26549702 +
2 domain predictions
 –
Lj2g3v1925770.1
n.a. TNP2 [Antirrhinum majus] gi|1345502|emb|CAA40555.1| chr2 28362027 28375651 +
2 domain predictions
 –
LotjaGi1g1v0162400_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT3G45910.1 hypothetical protein; Swiss-Prot: sp|O64332|TIPL_BPN15 Tail tip protein L; TrEMBL-Plants: tr|A0A151QM71|A0A151QM71_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0162400_LC LjG1.1_chr1 30535221 30544298 +
2 domain predictions
 –
LotjaGi1g1v0164400_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G32010.1 myosin heavy chain-like protein; Swiss-Prot: sp|A9KLM3|RIMM_CLOPH Ribosome maturation factor RimM; TrEMBL-Plants: tr|A0A151QUM2|A0A151QUM2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0164400_LC LjG1.1_chr1 31026684 31030178 -
2 domain predictions
 –
LotjaGi1g1v0244100_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; Swiss-Prot: sp|Q3B7N1|CHD1L_BOVIN Chromodomain-helicase-DNA-binding protein 1-like; TrEMBL-Plants: tr|A0A151QM71|A0A151QM71_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0244100_LC LjG1.1_chr1 58489906 58494284 +
2 domain predictions
 –
LotjaGi1g1v0571700_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT3G55005.1 tonneau 1b (TON1b); Swiss-Prot: sp|Q736A5|HIS82_BACC1 Histidinol-phosphate aminotransferase 2; TrEMBL-Plants: tr|I3SD30|I3SD30_MEDTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0571700_LC LjG1.1_chr1 110533921 110535250 -
2 domain predictions
 –
LotjaGi1g1v0577600_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q711Q0|CJ071_HUMAN Uncharacterized protein C10orf71; TrEMBL-Plants: tr|V7C1B5|V7C1B5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0577600_LC LjG1.1_chr1 111702873 111715419 +
2 domain predictions
 –
LotjaGi2g1v0052000_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT4G38240.3 alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase; Swiss-Prot: sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1; TrEMBL-Plants: tr|I1MHP5|I1MHP5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0052000_LC LjG1.1_chr2 10228876 10230591 +
2 domain predictions
 –
LotjaGi2g1v0122400_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G27640.1 translation initiation factor 3B1; Swiss-Prot: sp|P40981|XYLR_CALSR Putative xylose repressor; TrEMBL-Plants: tr|A0A151QM71|A0A151QM71_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0122400_LC LjG1.1_chr2 45029836 45038284 +
2 domain predictions
 –
LotjaGi2g1v0122400_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G27640.1 translation initiation factor 3B1; Swiss-Prot: sp|P40981|XYLR_CALSR Putative xylose repressor; TrEMBL-Plants: tr|A0A151QM71|A0A151QM71_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0122400_LC LjG1.1_chr2 45030087 45036315 +
2 domain predictions
 –
LotjaGi2g1v0163200_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT4G40080.1 ENTH/ANTH/VHS superfamily protein; TrEMBL-Plants: tr|I1MHP5|I1MHP5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0163200_LC LjG1.1_chr2 56960602 56962687 -
2 domain predictions
 –
LotjaGi2g1v0204800_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G09700.1 dsRNA-binding domain-like superfamily protein; Swiss-Prot: sp|Q5QWY0|PUR4_IDILO Phosphoribosylformylglycinamidine synthase; TrEMBL-Plants: tr|A0A151UDK9|A0A151UDK9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0204800_LC LjG1.1_chr2 64780365 64788042 -
2 domain predictions
 –
LotjaGi2g1v0204800_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G09700.1 dsRNA-binding domain-like superfamily protein; Swiss-Prot: sp|Q5QWY0|PUR4_IDILO Phosphoribosylformylglycinamidine synthase; TrEMBL-Plants: tr|A0A151UDK9|A0A151UDK9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0204800_LC LjG1.1_chr2 64781401 64787966 -
2 domain predictions
 –
LotjaGi2g1v0307000_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT3G54160.1 RNI-like superfamily protein; Swiss-Prot: sp|Q17043|APLY_APLKU Aplysianin-A; TrEMBL-Plants: tr|A0A151UDP2|A0A151UDP2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0307000_LC LjG1.1_chr2 78069729 78071605 +
2 domain predictions
 –
LotjaGi2g1v0309000_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT3G11640.2 transmembrane protein; Swiss-Prot: sp|Q9XZV4|GNAQ_GEOCY Guanine nucleotide-binding protein G(q) subunit alpha; TrEMBL-Plants: tr|A0A0R0HGX3|A0A0R0HGX3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0309000_LC LjG1.1_chr2 78334749 78336140 -
2 domain predictions
 –
LotjaGi3g1v0050700_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT2G19280.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9NRA2|S17A5_HUMAN Sialin; TrEMBL-Plants: tr|A0A151RB78|A0A151RB78_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0050700_LC LjG1.1_chr3 5283122 5288100 -
2 domain predictions
 –
LotjaGi3g1v0187800_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G19470.1 nudix hydrolase homolog 24; Swiss-Prot: sp|Q164S6|QUEA_ROSDO S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TrEMBL-Plants: tr|A0A151UDK9|A0A151UDK9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0187800_LC LjG1.1_chr3 26449533 26453860 +
2 domain predictions
 –
LotjaGi3g1v0410300_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G69420.1 DHHC-type zinc finger family protein; Swiss-Prot: sp|Q9SVV9|AML3_ARATH Protein MEI2-like 3; TrEMBL-Plants: tr|A0A151QM71|A0A151QM71_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0410300_LC LjG1.1_chr3 81410667 81413650 -
2 domain predictions
 –
LotjaGi4g1v0070800_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT2G46250.1 myosin heavy chain-like protein; Swiss-Prot: sp|Q11EU7|METE_CHESB 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TrEMBL-Plants: tr|A0A151S7B9|A0A151S7B9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0070800_LC LjG1.1_chr4 8973873 8977099 +
2 domain predictions
 –
LotjaGi4g1v0134000_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT4G38240.3 alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase; TrEMBL-Plants: tr|I1MHP5|I1MHP5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0134000_LC LjG1.1_chr4 19532416 19534131 +
2 domain predictions
 –
LotjaGi4g1v0186900_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT3G11640.2 transmembrane protein; Swiss-Prot: sp|Q03ER2|TGT_PEDPA Queuine tRNA-ribosyltransferase; TrEMBL-Plants: tr|A0A151QUM2|A0A151QUM2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0186900_LC LjG1.1_chr4 42290518 42296789 +
2 domain predictions
 –
LotjaGi4g1v0186900_LC.6
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT3G11640.2 transmembrane protein; Swiss-Prot: sp|Q03ER2|TGT_PEDPA Queuine tRNA-ribosyltransferase; TrEMBL-Plants: tr|A0A151QUM2|A0A151QUM2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0186900_LC LjG1.1_chr4 42290638 42296487 +
2 domain predictions
 –
LotjaGi4g1v0423100_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT3G60440.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q0STS8|CAPPA_CLOPS Phosphoenolpyruvate carboxylase; TrEMBL-Plants: tr|A0A151QM71|A0A151QM71_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0423100_LC LjG1.1_chr4 79789718 79793088 -
2 domain predictions
 –
LotjaGi4g1v0423100_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT3G60440.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q0STS8|CAPPA_CLOPS Phosphoenolpyruvate carboxylase; TrEMBL-Plants: tr|A0A151QM71|A0A151QM71_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0423100_LC LjG1.1_chr4 79789718 79793088 -
2 domain predictions
 –
LotjaGi4g1v0423100_LC.3
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G48370.1 YELLOW STRIPE like 8; Swiss-Prot: sp|Q0STS8|CAPPA_CLOPS Phosphoenolpyruvate carboxylase; TrEMBL-Plants: tr|A0A151QM71|A0A151QM71_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0423100_LC LjG1.1_chr4 79789761 79793015 -
2 domain predictions
 –
LotjaGi4g1v0423100_LC.4
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT3G60440.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q0STS8|CAPPA_CLOPS Phosphoenolpyruvate carboxylase; TrEMBL-Plants: tr|A0A151QM71|A0A151QM71_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0423100_LC LjG1.1_chr4 79789761 79793015 -
2 domain predictions
 –
LotjaGi4g1v0423100_LC.5
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT3G60440.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q0STS8|CAPPA_CLOPS Phosphoenolpyruvate carboxylase; TrEMBL-Plants: tr|A0A151QM71|A0A151QM71_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0423100_LC LjG1.1_chr4 79789831 79792981 -
2 domain predictions
 –
LotjaGi4g1v0423100_LC.6
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT3G60440.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q0STS8|CAPPA_CLOPS Phosphoenolpyruvate carboxylase; TrEMBL-Plants: tr|A0A151QM71|A0A151QM71_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0423100_LC LjG1.1_chr4 79789831 79792981 -
2 domain predictions
 –
LotjaGi4g1v0423100_LC.7
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT3G60440.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q0STS8|CAPPA_CLOPS Phosphoenolpyruvate carboxylase; TrEMBL-Plants: tr|A0A151QM71|A0A151QM71_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0423100_LC LjG1.1_chr4 79789849 79792975 -
2 domain predictions
 –
LotjaGi5g1v0212600_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT2G46250.1 myosin heavy chain-like protein; Swiss-Prot: sp|Q11EU7|METE_CHESB 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TrEMBL-Plants: tr|A0A151S7B9|A0A151S7B9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0212600_LC LjG1.1_chr5 51753195 51756474 +
2 domain predictions
 –
LotjaGi5g1v0281700_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G35215.1 transmembrane protein; Swiss-Prot: sp|Q6F873|SYFB_ACIAD Phenylalanine--tRNA ligase beta subunit; TrEMBL-Plants: tr|A0A151QM71|A0A151QM71_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0281700_LC LjG1.1_chr5 59779786 59780990 -
2 domain predictions
 –
LotjaGi6g1v0026600_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT4G38240.3 alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase; Swiss-Prot: sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1; TrEMBL-Plants: tr|I1MHP5|I1MHP5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0026600_LC LjG1.1_chr6 4701376 4703076 -
2 domain predictions
 –