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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR040194
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 8 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.428s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0229900_LC.1
n.a. CWF19-like protein 2; TAIR: AT1G56290.1 CwfJ-like family protein; Swiss-Prot: sp|Q8BG79|C19L2_MOUSE CWF19-like protein 2; TrEMBL-Plants: tr|A0A0L9TEC4|A0A0L9TEC4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0229900_LC LjG1.1_chr1 53831276 53845046 -
2 domain predictions
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LotjaGi2g1v0083200.1
n.a. CWF19-like protein 2; TAIR: AT1G56290.1 CwfJ-like family protein; Swiss-Prot: sp|Q28C44|C19L2_XENTR CWF19-like protein 2; TrEMBL-Plants: tr|A0A151U7T1|A0A151U7T1_CAJCA CWF19-like protein 2; Found in the gene: LotjaGi2g1v0083200 LjG1.1_chr2 22961744 22968234 -
2 domain predictions
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LotjaGi4g1v0309500.3
n.a. Zinc finger CCCH domain protein; TAIR: AT5G56900.1 CwfJ-like family protein / zinc finger (CCCH-type) family protein; Swiss-Prot: sp|Q69NK8|C3H59_ORYSJ Zinc finger CCCH domain-containing protein 59; TrEMBL-Plants: tr|A0A151SRU7|A0A151SRU7_CAJCA Zinc finger CCCH domain-containing protein 64; Found in the gene: LotjaGi4g1v0309500 LjG1.1_chr4 68552617 68557269 -
2 domain predictions
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LotjaGi4g1v0309500.4
n.a. Zinc finger CCCH domain-containing protein 64; TAIR: AT5G56900.2 CwfJ-like family protein / zinc finger (CCCH-type) family protein; Swiss-Prot: sp|Q84WU9|C3H64_ARATH Zinc finger CCCH domain-containing protein 64; TrEMBL-Plants: tr|A0A151SRU7|A0A151SRU7_CAJCA Zinc finger CCCH domain-containing protein 64; Found in the gene: LotjaGi4g1v0309500 LjG1.1_chr4 68557347 68558036 -
2 domain predictions
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LotjaGi5g1v0330200.1
n.a. CWF19-like protein 2; TAIR: AT1G56290.1 CwfJ-like family protein; Swiss-Prot: sp|Q28C44|C19L2_XENTR CWF19-like protein 2; TrEMBL-Plants: tr|A0A151U7T1|A0A151U7T1_CAJCA CWF19-like protein 2; Found in the gene: LotjaGi5g1v0330200 LjG1.1_chr5 64728974 64738571 +
2 domain predictions
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LotjaGi5g1v0330200.2
n.a. CWF19-like protein 2; TAIR: AT1G56290.1 CwfJ-like family protein; Swiss-Prot: sp|Q28C44|C19L2_XENTR CWF19-like protein 2; TrEMBL-Plants: tr|A0A151U7T1|A0A151U7T1_CAJCA CWF19-like protein 2; Found in the gene: LotjaGi5g1v0330200 LjG1.1_chr5 64729138 64738571 +
2 domain predictions
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LotjaGi5g1v0330200.3
n.a. CWF19-like protein 2; TAIR: AT1G56290.1 CwfJ-like family protein; Swiss-Prot: sp|Q28C44|C19L2_XENTR CWF19-like protein 2; TrEMBL-Plants: tr|A0A151U7T1|A0A151U7T1_CAJCA CWF19-like protein 2; Found in the gene: LotjaGi5g1v0330200 LjG1.1_chr5 64729178 64738426 +
2 domain predictions
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LotjaGi5g1v0330200.4
n.a. CWF19-like protein 2; TAIR: AT1G56290.1 CwfJ-like family protein; Swiss-Prot: sp|Q28C44|C19L2_XENTR CWF19-like protein 2; TrEMBL-Plants: tr|A0A151U7T1|A0A151U7T1_CAJCA CWF19-like protein 2; Found in the gene: LotjaGi5g1v0330200 LjG1.1_chr5 64729865 64737645 +
2 domain predictions
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