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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • G3DSA:3.40.50.10490
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 30 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.023s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0055359.1
n.a. PREDICTED: UTP--glucose-1-phosphate uridylyltransferase-like [Cicer arietinum] gi|502130616|ref|XP_004500712.1| chr0 17850852 17863416 -
1 domain prediction
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Lj0g3v0299609.1
n.a. PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic-like isoform X1 [Cicer arietinum] gi|502095323|ref|XP_004490427.1| chr0 155653057 155660221 -
1 domain prediction
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Lj1g3v0913320.1
n.a. Glucose-6-phosphate isomerase [Medicago truncatula] gi|357496261|ref|XP_003618419.1| chr1 11658539 11666402 -
1 domain prediction
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Lj1g3v1582530.1
n.a. PREDICTED: glucose-6-phosphate isomerase-like [Glycine max] gi|356508007|ref|XP_003522754.1| chr1 19001425 19005653 +
1 domain prediction
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Lj1g3v2838100.1
n.a. PREDICTED: glutamine--fructose-6-phosphate aminotransferase [isomerizing] gi|502105634|ref|XP_004492850.1| chr1 32268957 32278399 +
1 domain prediction
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Lj1g3v2838100.2
n.a. PREDICTED: glutamine--fructose-6-phosphate aminotransferase [isomerizing] gi|502105634|ref|XP_004492850.1| chr1 32268957 32276780 +
1 domain prediction
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Lj1g3v4515420.1
n.a. PREDICTED: probable arabinose 5-phosphate isomerase-like [Cicer arietinum] gi|502110037|ref|XP_004493784.1| chr1 52891336 52893228 +
1 domain prediction
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Lj3g3v0029610.1
n.a. PREDICTED: glucose-6-phosphate isomerase, cytosolic 1-like [Glycine max] gi|356572070|ref|XP_003554193.1| chr3 405752 409868 +
1 domain prediction
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Lj3g3v0029620.1
n.a. Glucose-6-phosphate isomerase [Medicago truncatula] gi|357496261|ref|XP_003618419.1| chr3 409166 413306 +
1 domain prediction
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Lj3g3v0937870.1
n.a. PREDICTED: 40S ribosomal protein SA-like [Cicer arietinum] gi|502136969|ref|XP_004502915.1| chr3 11306296 11309159 -
1 domain prediction
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Lj3g3v2575940.1
n.a. PREDICTED: 40S ribosomal protein SA-like [Cicer arietinum] gi|502136998|ref|XP_004502927.1| chr3 31461072 31462880 -
1 domain prediction
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Lj3g3v2575940.2
n.a. PREDICTED: 40S ribosomal protein SA-like [Cicer arietinum] gi|502136998|ref|XP_004502927.1| chr3 31461072 31462880 -
1 domain prediction
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Lj4g3v2655230.1
n.a. PREDICTED: 40S ribosomal protein SA-like [Cicer arietinum] gi|502136998|ref|XP_004502927.1| chr4 36031119 36032160 +
1 domain prediction
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Ljchlorog3v0000410.1
n.a. ribosomal protein S2 [Lotus japonicus] gi|13518439|ref|NP_084799.1| chloro 44952 45662 +
1 domain prediction
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LotjaGi1g1v0138800.1
n.a. Glucose-6-phosphate isomerase; TAIR: AT4G24620.1 phosphoglucose isomerase 1; Swiss-Prot: sp|Q8H103|G6PIP_ARATH Glucose-6-phosphate isomerase 1, chloroplastic; TrEMBL-Plants: tr|A0A0L9UZX3|A0A0L9UZX3_PHAAN Glucose-6-phosphate isomerase; Found in the gene: LotjaGi1g1v0138800 LjG1.1_chr1 22648588 22657346 -
1 domain prediction
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LotjaGi1g1v0274300.1
n.a. Glucose-6-phosphate isomerase; TAIR: AT5G42740.1 Sugar isomerase (SIS) family protein; Swiss-Prot: sp|P54235|G6PI1_CLACO Glucose-6-phosphate isomerase, cytosolic 1; TrEMBL-Plants: tr|I1JTB8|I1JTB8_SOYBN Glucose-6-phosphate isomerase; Found in the gene: LotjaGi1g1v0274300 LjG1.1_chr1 67229627 67237695 +
1 domain prediction
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LotjaGi1g1v0274300.2
n.a. Glucose-6-phosphate isomerase; TAIR: AT5G42740.1 Sugar isomerase (SIS) family protein; Swiss-Prot: sp|P54235|G6PI1_CLACO Glucose-6-phosphate isomerase, cytosolic 1; TrEMBL-Plants: tr|I1JTB8|I1JTB8_SOYBN Glucose-6-phosphate isomerase; Found in the gene: LotjaGi1g1v0274300 LjG1.1_chr1 67229887 67236811 +
1 domain prediction
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LotjaGi1g1v0348400.1
n.a. Glucose-6-phosphate isomerase; TAIR: AT4G24620.1 phosphoglucose isomerase 1; Swiss-Prot: sp|Q8H103|G6PIP_ARATH Glucose-6-phosphate isomerase 1, chloroplastic; TrEMBL-Plants: tr|I1JV39|I1JV39_SOYBN Glucose-6-phosphate isomerase; Found in the gene: LotjaGi1g1v0348400 LjG1.1_chr1 81717360 81722410 -
1 domain prediction
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LotjaGi1g1v0486600.1
n.a. Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; TAIR: AT3G24090.1 putative glucosamine-fructose-6-phosphate aminotransferase; Swiss-Prot: sp|Q4KMC4|GFPT2_RAT Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2; TrEMBL-Plants: tr|G7KRK3|G7KRK3_MEDTR Glucosamine-fructose-6-phosphate aminotransferase; Found in the gene: LotjaGi1g1v0486600 LjG1.1_chr1 99975472 99983963 +
1 domain prediction
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LotjaGi1g1v0486600.2
n.a. Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; TAIR: AT3G24090.1 putative glucosamine-fructose-6-phosphate aminotransferase; Swiss-Prot: sp|Q4KMC4|GFPT2_RAT Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2; TrEMBL-Plants: tr|G7KRK3|G7KRK3_MEDTR Glucosamine-fructose-6-phosphate aminotransferase; Found in the gene: LotjaGi1g1v0486600 LjG1.1_chr1 99975560 99981538 +
1 domain prediction
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LotjaGi1g1v0486600.3
n.a. Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; TAIR: AT3G24090.1 putative glucosamine-fructose-6-phosphate aminotransferase; Swiss-Prot: sp|Q4KMC4|GFPT2_RAT Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2; TrEMBL-Plants: tr|G7KRK3|G7KRK3_MEDTR Glucosamine-fructose-6-phosphate aminotransferase; Found in the gene: LotjaGi1g1v0486600 LjG1.1_chr1 99975560 99981538 +
1 domain prediction
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LotjaGi1g1v0557100.1
n.a. 30S ribosomal S2; TAIR: AT3G03250.1 UDP-GLUCOSE PYROPHOSPHORYLASE 1; Swiss-Prot: sp|Q9SDX3|UGPA_MUSAC UTP--glucose-1-phosphate uridylyltransferase; TrEMBL-Plants: tr|Q2PEV2|Q2PEV2_TRIPR Putative UDP-glucose pyrophosphorylase; Found in the gene: LotjaGi1g1v0557100 LjG1.1_chr1 108892964 108901481 -
1 domain prediction
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LotjaGi1g1v0708000.1
n.a. Arabinose 5-phosphate isomerase, putative; TAIR: AT3G54690.1 Sugar isomerase (SIS) family protein; Swiss-Prot: sp|Q9M1T1|SETH3_ARATH Probable arabinose 5-phosphate isomerase; TrEMBL-Plants: tr|A0A072UDP6|A0A072UDP6_MEDTR Arabinose 5-phosphate isomerase, putative; Found in the gene: LotjaGi1g1v0708000 LjG1.1_chr1 127636058 127638540 -
1 domain prediction
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LotjaGi3g1v0130900.1
n.a. 40S ribosomal protein SA; TAIR: AT3G04770.2 40s ribosomal protein SA B; Swiss-Prot: sp|O65751|RSSA_CICAR 40S ribosomal protein SA; TrEMBL-Plants: tr|A0A151QSB7|A0A151QSB7_CAJCA 40S ribosomal protein SA; Found in the gene: LotjaGi3g1v0130900 LjG1.1_chr3 16343230 16346260 -
1 domain prediction
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LotjaGi3g1v0409500.1
n.a. 40S ribosomal protein SA; TAIR: AT3G04770.2 40s ribosomal protein SA B; Swiss-Prot: sp|O65751|RSSA_CICAR 40S ribosomal protein SA; TrEMBL-Plants: tr|A0A1J7HDL8|A0A1J7HDL8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0409500 LjG1.1_chr3 81336014 81338462 -
1 domain prediction
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LotjaGi3g1v0409500.2
n.a. 40S ribosomal protein SA; TAIR: AT3G04770.2 40s ribosomal protein SA B; Swiss-Prot: sp|O65751|RSSA_CICAR 40S ribosomal protein SA; TrEMBL-Plants: tr|A0A1J7HDL8|A0A1J7HDL8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0409500 LjG1.1_chr3 81336279 81338344 -
1 domain prediction
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LotjaGi3g1v0409500.3
n.a. 40S ribosomal protein SA; TAIR: AT3G04770.1 40s ribosomal protein SA B; Swiss-Prot: sp|O22518|RSSA_SOYBN 40S ribosomal protein SA; TrEMBL-Plants: tr|A0A0R0FJR0|A0A0R0FJR0_SOYBN 40S ribosomal protein SA; Found in the gene: LotjaGi3g1v0409500 LjG1.1_chr3 81337276 81338285 -
1 domain prediction
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LotjaGi5g1v0302700.1
n.a. 3-hexulose-6-phosphate isomerase; TAIR: AT5G52190.1 Sugar isomerase (SIS) family protein; Swiss-Prot: sp|P42404|PHI_BACSU 3-hexulose-6-phosphate isomerase; TrEMBL-Plants: tr|V7BEQ7|V7BEQ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0302700 LjG1.1_chr5 62072519 62073483 +
1 domain prediction
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LotjaGi6g1v0140500_LC.1
n.a. Arabinose 5-phosphate isomerase, putative; TAIR: AT3G54690.1 Sugar isomerase (SIS) family protein; Swiss-Prot: sp|Q9M1T1|SETH3_ARATH Probable arabinose 5-phosphate isomerase; TrEMBL-Plants: tr|A0A151TUL7|A0A151TUL7_CAJCA Uncharacterized protein CPn-0526/CP-0226/CPj0526/CpB0547; Found in the gene: LotjaGi6g1v0140500_LC LjG1.1_chr6 40763019 40769476 +
1 domain prediction
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LotjaGi6g1v0140500_LC.2
n.a. Arabinose 5-phosphate isomerase, putative; TAIR: AT3G54690.1 Sugar isomerase (SIS) family protein; Swiss-Prot: sp|Q9M1T1|SETH3_ARATH Probable arabinose 5-phosphate isomerase; TrEMBL-Plants: tr|A0A151TUL7|A0A151TUL7_CAJCA Uncharacterized protein CPn-0526/CP-0226/CPj0526/CpB0547; Found in the gene: LotjaGi6g1v0140500_LC LjG1.1_chr6 40763052 40769871 +
1 domain prediction
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