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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005123
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 423 results. Now displaying 1 of 9 with 50 rows per page. This search has taken 0.162s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0020329.1
n.a. PREDICTED: gibberellin 20 oxidase 1-like [Glycine max] gi|356534616|ref|XP_003535849.1| chr0 8177632 8181635 -
2 domain predictions
2 GO terms
Lj0g3v0059599.1
n.a. PREDICTED: protein SRG1-like [Cicer arietinum] gi|502086496|ref|XP_004488237.1| chr0 19732789 19735265 -
3 domain predictions
2 GO terms
Lj0g3v0070239.1
n.a. Transport protein sec31 isoform 1 [Theobroma cacao] gi|508702955|gb|EOX94851.1| chr0 25566523 25571964 -
3 domain predictions
2 GO terms
Lj0g3v0071479.1
n.a. PREDICTED: gibberellin 20 oxidase 2-like [Glycine max] gi|356574452|ref|XP_003555361.1| chr0 26230116 26232723 +
3 domain predictions
2 GO terms
Lj0g3v0076609.2
n.a. PREDICTED: hyoscyamine 6-dioxygenase-like [Cicer arietinum] gi|502101880|ref|XP_004491898.1| chr0 29240972 29244560 +
3 domain predictions
2 GO terms
Lj0g3v0081939.2
n.a. PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Glycine max] gi|356513995|ref|XP_003525693.1| chr0 32081629 32097133 +
3 domain predictions
2 GO terms
Lj0g3v0086189.1
n.a. PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Glycine max] gi|356522371|ref|XP_003529820.1| chr0 34713227 34713796 +
3 domain predictions
2 GO terms
Lj0g3v0086199.1
n.a. PREDICTED: gibberellin 20 oxidase 1-like [Glycine max] gi|356519411|ref|XP_003528366.1| chr0 34714203 34716416 -
3 domain predictions
2 GO terms
Lj0g3v0087229.1
n.a. PREDICTED: protein SRG1-like [Glycine max] gi|356512273|ref|XP_003524845.1| chr0 35394704 35395583 +
3 domain predictions
2 GO terms
Lj0g3v0090949.1
n.a. PREDICTED: hyoscyamine 6-dioxygenase-like [Cicer arietinum] gi|502148843|ref|XP_004507291.1| chr0 37601692 37603978 -
3 domain predictions
2 GO terms
Lj0g3v0099859.1
n.a. PREDICTED: gibberellin 2-beta-dioxygenase 2-like [Glycine max] gi|356536677|ref|XP_003536863.1| chr0 42354210 42359040 +
3 domain predictions
2 GO terms
Lj0g3v0105499.1
n.a. PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Glycine max] gi|356559589|ref|XP_003548081.1| chr0 45246719 45250005 +
3 domain predictions
2 GO terms
Lj0g3v0106889.1
n.a. PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Cicer arietinum] gi|502080869|ref|XP_004486708.1| chr0 46059727 46060786 -
2 domain predictions
2 GO terms
Lj0g3v0106899.1
n.a. PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Cicer arietinum] gi|502080869|ref|XP_004486708.1| chr0 46059727 46062089 -
2 domain predictions
2 GO terms
Lj0g3v0108499.1
n.a. PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Fragaria vesca subsp]. vesca] gi|470149251|ref|XP_004310153.1| chr0 46913017 46915272 -
2 domain predictions
2 GO terms
Lj0g3v0108509.1
n.a. PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Fragaria vesca subsp]. vesca] gi|470149251|ref|XP_004310153.1| chr0 46913130 46918215 -
3 domain predictions
2 GO terms
Lj0g3v0109219.2
n.a. 1-aminocyclopropane-1-carboxylate oxidase [Medicago truncatula] gi|357493191|ref|XP_003616884.1| chr0 47241375 47243014 +
3 domain predictions
2 GO terms
Lj0g3v0109249.1
n.a. PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Glycine max] gi|356552539|ref|XP_003544624.1| chr0 47272085 47276320 +
3 domain predictions
2 GO terms
Lj0g3v0115909.1
n.a. gibberellin 20-oxidase [Phaseolus vulgaris] gi|2262201|gb|AAC49756.1| chr0 50943908 50945862 +
3 domain predictions
2 GO terms
Lj0g3v0129829.1
n.a. PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Glycine max] gi|356550516|ref|XP_003543632.1| chr0 58792912 58797868 +
3 domain predictions
2 GO terms
Lj0g3v0133199.1
n.a. PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Cicer arietinum] gi|502129372|ref|XP_004500277.1| chr0 60898031 60902894 +
3 domain predictions
2 GO terms
Lj0g3v0155789.1
n.a. PREDICTED: gibberellin 20 oxidase 3-like [Glycine max] gi|356570431|ref|XP_003553391.1| chr0 73039109 73041676 -
3 domain predictions
2 GO terms
Lj0g3v0155799.1
n.a. PREDICTED: 2'-deoxymugineic-acid 2'-dioxygenase-like [Glycine max] gi|356571969|ref|XP_003554143.1| chr0 73041814 73043850 +
2 domain predictions
2 GO terms
Lj0g3v0162599.1
n.a. PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Glycine max] gi|356569949|ref|XP_003553156.1| chr0 76742697 76745161 +
3 domain predictions
2 GO terms
Lj0g3v0163149.1
n.a. PREDICTED: protein SRG1-like [Cicer arietinum] gi|502089652|ref|XP_004488976.1| chr0 77077728 77080505 +
3 domain predictions
2 GO terms
Lj0g3v0163879.1
n.a. 2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1 [Theobroma cacao] gi|508778273|gb|EOY25529.1| chr0 77503006 77510893 -
2 domain predictions
2 GO terms
Lj0g3v0186299.1
n.a. Prolyl 4-hydroxylase subunit alpha-1 [Medicago truncatula] gi|357476355|ref|XP_003608463.1| chr0 90741730 90745161 -
3 domain predictions
2 GO terms
Lj0g3v0187809.1
n.a. Prolyl 4-hydroxylase subunit alpha-1 [Medicago truncatula] gi|357476355|ref|XP_003608463.1| chr0 91631170 91634538 +
2 domain predictions
2 GO terms
Lj0g3v0205419.1
n.a. PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Cicer arietinum] gi|502123789|ref|XP_004498259.1| chr0 102188440 102191888 -
3 domain predictions
2 GO terms
Lj0g3v0207669.1
n.a. Gibberellin 20 oxidase [Medicago truncatula] gi|357464719|ref|XP_003602641.1| chr0 103858536 103860057 +
3 domain predictions
2 GO terms
Lj0g3v0213339.1
n.a. Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|357463907|ref|XP_003602235.1| chr0 107719734 107722074 -
3 domain predictions
2 GO terms
Lj0g3v0227109.1
n.a. PREDICTED: protein SRG1-like [Glycine max] gi|356512273|ref|XP_003524845.1| chr0 117351348 117352418 +
2 domain predictions
2 GO terms
Lj0g3v0237609.1
n.a. PREDICTED: leucoanthocyanidin dioxygenase-like isoform X2 [Cicer arietinum] gi|502129760|ref|XP_004500416.1| chr0 123201889 123202973 -
2 domain predictions
2 GO terms
Lj0g3v0242139.1
n.a. PREDICTED: hyoscyamine 6-dioxygenase-like [Fragaria vesca subsp]. vesca] gi|470111949|ref|XP_004292202.1| chr0 125631214 125632523 -
3 domain predictions
2 GO terms
Lj0g3v0242139.2
n.a. PREDICTED: hyoscyamine 6-dioxygenase-like [Fragaria vesca subsp]. vesca] gi|470111949|ref|XP_004292202.1| chr0 125631214 125632535 -
3 domain predictions
2 GO terms
Lj0g3v0246969.1
n.a. PREDICTED: protein SRG1-like [Glycine max] gi|356499960|ref|XP_003518803.1| chr0 127997684 127999951 -
3 domain predictions
2 GO terms
Lj0g3v0257939.1
n.a. PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Glycine max] gi|356568250|ref|XP_003552326.1| chr0 133923293 133928195 -
3 domain predictions
2 GO terms
Lj0g3v0274439.1
n.a. GA 20-oxidase [Sesbania rostrata] gi|68509984|gb|AAY98356.1| chr0 142287027 142290257 +
3 domain predictions
2 GO terms
Lj0g3v0281419.1
n.a. PREDICTED: gibberellin 2-beta-dioxygenase-like [Glycine max] gi|356549099|ref|XP_003542935.1| chr0 145888834 145890568 +
3 domain predictions
2 GO terms
Lj0g3v0285319.1
n.a. PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase-like [Glycine max] gi|356495151|ref|XP_003516444.1| chr0 148036672 148039529 -
3 domain predictions
2 GO terms
Lj0g3v0299829.1
n.a. Leucoanthocyanidin dioxygenase [Medicago truncatula] gi|357468779|ref|XP_003604674.1| chr0 155761417 155765110 -
3 domain predictions
2 GO terms
Lj0g3v0304399.1
n.a. PREDICTED: gibberellin 20 oxidase 1-like [Glycine max] gi|356519411|ref|XP_003528366.1| chr0 158554959 158557453 +
2 domain predictions
2 GO terms
Lj0g3v0305619.1
n.a. PREDICTED: gibberellin 20 oxidase 1-like [Fragaria vesca subsp]. vesca] gi|470108023|ref|XP_004290335.1| chr0 159341916 159344863 +
3 domain predictions
2 GO terms
Lj0g3v0319069.1
n.a. PREDICTED: protein SRG1-like [Glycine max] gi|356512273|ref|XP_003524845.1| chr0 166596349 166597174 +
3 domain predictions
2 GO terms
Lj0g3v0322199.1
n.a. PREDICTED: gibberellin 2-beta-dioxygenase 2-like [Glycine max] gi|356558109|ref|XP_003547350.1| chr0 168198165 168205869 +
3 domain predictions
2 GO terms
Lj0g3v0324989.1
n.a. PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH6-like [Glycine max] gi|356559947|ref|XP_003548257.1| chr0 169900726 169904539 -
2 domain predictions
2 GO terms
Lj0g3v0338039.1
n.a. PREDICTED: leucoanthocyanidin dioxygenase-like [Glycine max] gi|356521024|ref|XP_003529158.1| chr0 177062981 177066330 -
3 domain predictions
2 GO terms
Lj0g3v0346469.1
n.a. PREDICTED: protein SRG1-like [Glycine max] gi|356512273|ref|XP_003524845.1| chr0 181757336 181760228 -
3 domain predictions
2 GO terms
Lj0g3v0348829.1
n.a. PREDICTED: protein SRG1-like [Glycine max] gi|356512273|ref|XP_003524845.1| chr0 183104368 183105375 +
3 domain predictions
2 GO terms
Lj0g3v0357449.2
n.a. PREDICTED: protein SRG1-like [Glycine max] gi|356499960|ref|XP_003518803.1| chr0 188200331 188201475 -
3 domain predictions
2 GO terms