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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR10209
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 416 results. Now displaying 1 of 9 with 50 rows per page. This search has taken 0.079s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0020329.1
n.a. PREDICTED: gibberellin 20 oxidase 1-like [Glycine max] gi|356534616|ref|XP_003535849.1| chr0 8177632 8181635 -
1 domain prediction
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Lj0g3v0059599.1
n.a. PREDICTED: protein SRG1-like [Cicer arietinum] gi|502086496|ref|XP_004488237.1| chr0 19732789 19735265 -
1 domain prediction
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Lj0g3v0071479.1
n.a. PREDICTED: gibberellin 20 oxidase 2-like [Glycine max] gi|356574452|ref|XP_003555361.1| chr0 26230116 26232723 +
1 domain prediction
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Lj0g3v0076609.1
n.a. PREDICTED: hyoscyamine 6-dioxygenase-like [Cicer arietinum] gi|502101880|ref|XP_004491898.1| chr0 29240972 29244560 +
1 domain prediction
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Lj0g3v0076609.2
n.a. PREDICTED: hyoscyamine 6-dioxygenase-like [Cicer arietinum] gi|502101880|ref|XP_004491898.1| chr0 29240972 29244560 +
1 domain prediction
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Lj0g3v0081939.1
n.a. PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Glycine max] gi|356513995|ref|XP_003525693.1| chr0 32081629 32086434 +
1 domain prediction
 –
Lj0g3v0081939.2
n.a. PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Glycine max] gi|356513995|ref|XP_003525693.1| chr0 32081629 32097133 +
1 domain prediction
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Lj0g3v0086189.1
n.a. PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Glycine max] gi|356522371|ref|XP_003529820.1| chr0 34713227 34713796 +
1 domain prediction
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Lj0g3v0086199.1
n.a. PREDICTED: gibberellin 20 oxidase 1-like [Glycine max] gi|356519411|ref|XP_003528366.1| chr0 34714203 34716416 -
1 domain prediction
 –
Lj0g3v0087229.1
n.a. PREDICTED: protein SRG1-like [Glycine max] gi|356512273|ref|XP_003524845.1| chr0 35394704 35395583 +
1 domain prediction
 –
Lj0g3v0090949.1
n.a. PREDICTED: hyoscyamine 6-dioxygenase-like [Cicer arietinum] gi|502148843|ref|XP_004507291.1| chr0 37601692 37603978 -
1 domain prediction
 –
Lj0g3v0099859.1
n.a. PREDICTED: gibberellin 2-beta-dioxygenase 2-like [Glycine max] gi|356536677|ref|XP_003536863.1| chr0 42354210 42359040 +
1 domain prediction
 –
Lj0g3v0105499.1
n.a. PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Glycine max] gi|356559589|ref|XP_003548081.1| chr0 45246719 45250005 +
1 domain prediction
 –
Lj0g3v0106889.1
n.a. PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Cicer arietinum] gi|502080869|ref|XP_004486708.1| chr0 46059727 46060786 -
1 domain prediction
 –
Lj0g3v0106899.1
n.a. PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Cicer arietinum] gi|502080869|ref|XP_004486708.1| chr0 46059727 46062089 -
1 domain prediction
 –
Lj0g3v0108499.1
n.a. PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Fragaria vesca subsp]. vesca] gi|470149251|ref|XP_004310153.1| chr0 46913017 46915272 -
1 domain prediction
 –
Lj0g3v0108509.1
n.a. PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Fragaria vesca subsp]. vesca] gi|470149251|ref|XP_004310153.1| chr0 46913130 46918215 -
1 domain prediction
 –
Lj0g3v0109219.1
n.a. PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase-like [Glycine max] gi|356554521|ref|XP_003545594.1| chr0 47241375 47243014 +
1 domain prediction
 –
Lj0g3v0109219.2
n.a. 1-aminocyclopropane-1-carboxylate oxidase [Medicago truncatula] gi|357493191|ref|XP_003616884.1| chr0 47241375 47243014 +
1 domain prediction
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Lj0g3v0109249.1
n.a. PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Glycine max] gi|356552539|ref|XP_003544624.1| chr0 47272085 47276320 +
1 domain prediction
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Lj0g3v0115909.1
n.a. gibberellin 20-oxidase [Phaseolus vulgaris] gi|2262201|gb|AAC49756.1| chr0 50943908 50945862 +
1 domain prediction
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Lj0g3v0132199.1
n.a. PREDICTED: protein SRG1-like [Glycine max] gi|356567965|ref|XP_003552185.1| chr0 60311977 60313963 +
1 domain prediction
 –
Lj0g3v0132619.1
n.a. PREDICTED: protein SRG1-like [Glycine max] gi|356512273|ref|XP_003524845.1| chr0 60525887 60526199 -
1 domain prediction
 –
Lj0g3v0133199.1
n.a. PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Cicer arietinum] gi|502129372|ref|XP_004500277.1| chr0 60898031 60902894 +
1 domain prediction
 –
Lj0g3v0133589.1
n.a. PREDICTED: hyoscyamine 6-dioxygenase-like [Cicer arietinum] gi|502148843|ref|XP_004507291.1| chr0 61145651 61147376 -
1 domain prediction
 –
Lj0g3v0155789.1
n.a. PREDICTED: gibberellin 20 oxidase 3-like [Glycine max] gi|356570431|ref|XP_003553391.1| chr0 73039109 73041676 -
1 domain prediction
 –
Lj0g3v0155799.1
n.a. PREDICTED: 2'-deoxymugineic-acid 2'-dioxygenase-like [Glycine max] gi|356571969|ref|XP_003554143.1| chr0 73041814 73043850 +
1 domain prediction
 –
Lj0g3v0155809.1
n.a. PREDICTED: gibberellin 20 oxidase 1-B-like [Glycine max] gi|356573843|ref|XP_003555065.1| chr0 73046686 73048683 -
1 domain prediction
 –
Lj0g3v0155819.1
n.a. PREDICTED: gibberellin 20 oxidase 1-like [Glycine max] gi|356571971|ref|XP_003554144.1| chr0 73048678 73049054 -
1 domain prediction
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Lj0g3v0162599.1
n.a. PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Glycine max] gi|356569949|ref|XP_003553156.1| chr0 76742697 76745161 +
1 domain prediction
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Lj0g3v0163149.1
n.a. PREDICTED: protein SRG1-like [Cicer arietinum] gi|502089652|ref|XP_004488976.1| chr0 77077728 77080505 +
1 domain prediction
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Lj0g3v0167309.1
n.a. PREDICTED: codeine O-demethylase-like [Glycine max] gi|356551436|ref|XP_003544081.1| chr0 79548589 79549132 -
1 domain prediction
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Lj0g3v0205419.1
n.a. PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Cicer arietinum] gi|502123789|ref|XP_004498259.1| chr0 102188440 102191888 -
1 domain prediction
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Lj0g3v0206159.1
n.a. PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Glycine max] gi|356559863|ref|XP_003548216.1| chr0 102694040 102694752 -
1 domain prediction
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Lj0g3v0207589.1
n.a. PREDICTED: protein SRG1-like [Solanum lycopersicum] gi|460374401|ref|XP_004232999.1| chr0 103784542 103786359 -
1 domain prediction
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Lj0g3v0207669.1
n.a. Gibberellin 20 oxidase [Medicago truncatula] gi|357464719|ref|XP_003602641.1| chr0 103858536 103860057 +
1 domain prediction
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Lj0g3v0213339.1
n.a. Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|357463907|ref|XP_003602235.1| chr0 107719734 107722074 -
1 domain prediction
 –
Lj0g3v0226289.1
n.a. PREDICTED: gibberellin 20 oxidase 1-like [Glycine max] gi|356534616|ref|XP_003535849.1| chr0 116875217 116875614 +
1 domain prediction
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Lj0g3v0227109.1
n.a. PREDICTED: protein SRG1-like [Glycine max] gi|356512273|ref|XP_003524845.1| chr0 117351348 117352418 +
1 domain prediction
 –
Lj0g3v0232029.1
n.a. PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Cicer arietinum] gi|502129372|ref|XP_004500277.1| chr0 120413676 120414143 +
1 domain prediction
 –
Lj0g3v0237609.1
n.a. PREDICTED: leucoanthocyanidin dioxygenase-like isoform X2 [Cicer arietinum] gi|502129760|ref|XP_004500416.1| chr0 123201889 123202973 -
1 domain prediction
 –
Lj0g3v0242139.1
n.a. PREDICTED: hyoscyamine 6-dioxygenase-like [Fragaria vesca subsp]. vesca] gi|470111949|ref|XP_004292202.1| chr0 125631214 125632523 -
1 domain prediction
 –
Lj0g3v0242139.2
n.a. PREDICTED: hyoscyamine 6-dioxygenase-like [Fragaria vesca subsp]. vesca] gi|470111949|ref|XP_004292202.1| chr0 125631214 125632535 -
1 domain prediction
 –
Lj0g3v0246969.1
n.a. PREDICTED: protein SRG1-like [Glycine max] gi|356499960|ref|XP_003518803.1| chr0 127997684 127999951 -
1 domain prediction
 –
Lj0g3v0248549.1
n.a. PREDICTED: hyoscyamine 6-dioxygenase-like [Cicer arietinum] gi|502101880|ref|XP_004491898.1| chr0 128827457 128830660 +
1 domain prediction
 –
Lj0g3v0257939.1
n.a. PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Glycine max] gi|356568250|ref|XP_003552326.1| chr0 133923293 133928195 -
1 domain prediction
 –
Lj0g3v0274439.1
n.a. GA 20-oxidase [Sesbania rostrata] gi|68509984|gb|AAY98356.1| chr0 142287027 142290257 +
1 domain prediction
 –
Lj0g3v0281409.1
n.a. PREDICTED: gibberellin 2-beta-dioxygenase-like isoform X2 [Cicer arietinum] gi|502141872|ref|XP_004504680.1| chr0 145888699 145888884 +
1 domain prediction
 –
Lj0g3v0281419.1
n.a. PREDICTED: gibberellin 2-beta-dioxygenase-like [Glycine max] gi|356549099|ref|XP_003542935.1| chr0 145888834 145890568 +
1 domain prediction
 –
Lj0g3v0285319.1
n.a. PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase-like [Glycine max] gi|356495151|ref|XP_003516444.1| chr0 148036672 148039529 -
1 domain prediction
 –