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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR10366
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 196 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 0.056s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0018979.1
n.a. PREDICTED: UDP-glucuronate 4-epimerase 5-like [Cicer arietinum] gi|502175956|ref|XP_004515772.1| chr0 7501168 7502433 +
1 domain prediction
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Lj0g3v0019009.1
n.a. PREDICTED: UDP-glucuronate 4-epimerase 5-like [Cicer arietinum] gi|502175956|ref|XP_004515772.1| chr0 7502435 7502657 +
1 domain prediction
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Lj0g3v0024229.1
n.a. PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Glycine max] gi|356525600|ref|XP_003531412.1| chr0 9650262 9669501 +
1 domain prediction
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Lj0g3v0024229.2
n.a. PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Glycine max] gi|356525600|ref|XP_003531412.1| chr0 9650262 9653325 +
1 domain prediction
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Lj0g3v0024229.3
n.a. PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Glycine max] gi|356556634|ref|XP_003546628.1| chr0 9665971 9669501 +
1 domain prediction
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Lj0g3v0024519.1
n.a. pinoresinol-lariciresinol reductase homolog [Lotus japonicus] gi|116077988|dbj|BAF34845.1| chr0 9773259 9775297 +
1 domain prediction
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Lj0g3v0045929.1
n.a. PREDICTED: cinnamoyl-CoA reductase 1-like [Cicer arietinum] gi|502100302|ref|XP_004491683.1| chr0 15107772 15110813 -
1 domain prediction
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Lj0g3v0045959.1
n.a. PREDICTED: cinnamoyl-CoA reductase 1-like [Cicer arietinum] gi|502100302|ref|XP_004491683.1| chr0 15112800 15115284 -
1 domain prediction
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Lj0g3v0047069.1
n.a. PREDICTED: UDP-glucose 4-epimerase GEPI48-like [Cicer arietinum] gi|502159740|ref|XP_004511515.1| chr0 15702901 15706938 +
1 domain prediction
 –
Lj0g3v0067389.1
n.a. pinoresinol-lariciresinol reductase homolog [Lotus japonicus] gi|116077990|dbj|BAF34846.1| chr0 23918993 23921836 +
1 domain prediction
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Lj0g3v0074759.1
n.a. RHM1 [Zea mays] gi|226503239|ref|NP_001151455.1| chr0 28291614 28291973 -
1 domain prediction
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Lj0g3v0075949.2
n.a. Dihydroflavonol-4-reductase [Medicago truncatula] gi|357516625|ref|XP_003628601.1| chr0 28892735 28895982 +
1 domain prediction
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Lj0g3v0075949.3
n.a. PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Cicer arietinum] gi|502154963|ref|XP_004509912.1| chr0 28892735 28900586 +
1 domain prediction
 –
Lj0g3v0075959.1
n.a. PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Cicer arietinum] gi|502154963|ref|XP_004509912.1| chr0 28897285 28904798 +
1 domain prediction
 –
Lj0g3v0075959.4
n.a. PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Cicer arietinum] gi|502154963|ref|XP_004509912.1| chr0 28902133 28904798 +
1 domain prediction
 –
Lj0g3v0090789.1
n.a. PREDICTED: GDP-mannose 4,6 dehydratase 2 [Vitis vinifera] gi|225431177|ref|XP_002269841.1| chr0 37487501 37489477 +
1 domain prediction
 –
Lj0g3v0098679.1
n.a. PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Glycine max] gi|356567412|ref|XP_003551914.1| chr0 41818471 41818830 +
1 domain prediction
 –
Lj0g3v0120879.1
n.a. PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Glycine max] gi|356550654|ref|XP_003543700.1| chr0 53779175 53784035 +
1 domain prediction
 –
Lj0g3v0154629.1
n.a. n.a. chr0 72443163 72445768 -
1 domain prediction
 –
Lj0g3v0154629.2
n.a. n.a. chr0 72443163 72444874 -
1 domain prediction
 –
Lj0g3v0192789.1
n.a. PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Glycine max] gi|356544508|ref|XP_003540692.1| chr0 94242889 94249315 -
1 domain prediction
 –
Lj0g3v0250699.1
n.a. Dihydroflavonol reductase [Medicago truncatula] gi|357458089|ref|XP_003599325.1| chr0 129960514 129969474 +
1 domain prediction
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Lj0g3v0250699.2
n.a. Dihydroflavonol reductase [Medicago truncatula] gi|357458089|ref|XP_003599325.1| chr0 129964986 129969474 +
1 domain prediction
 –
Lj0g3v0250699.3
n.a. PREDICTED: cinnamoyl-CoA reductase 1-like [Cicer arietinum] gi|502129455|ref|XP_004500311.1| chr0 129965218 129969474 +
1 domain prediction
 –
Lj0g3v0254979.1
n.a. PREDICTED: UDP-arabinose 4-epimerase 1-like [Glycine max] gi|356529038|ref|XP_003533104.1| chr0 132393359 132396140 -
1 domain prediction
 –
Lj0g3v0254979.2
n.a. PREDICTED: UDP-arabinose 4-epimerase 1-like [Glycine max] gi|356529038|ref|XP_003533104.1| chr0 132393359 132396140 -
1 domain prediction
 –
Lj0g3v0270259.1
n.a. High chlorophyll fluorescence phenotype 173 protein isoform 1 [Theobroma cacao] gi|508778923|gb|EOY26179.1| chr0 140028930 140035814 +
1 domain prediction
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Lj0g3v0270259.2
n.a. High chlorophyll fluorescence phenotype 173 protein isoform 1 [Theobroma cacao] gi|508778923|gb|EOY26179.1| chr0 140028930 140035814 +
1 domain prediction
 –
Lj0g3v0273919.1
n.a. dihydroflavonol 4-reductase [Lotus japonicus] gi|73661147|dbj|BAE19948.1| chr0 141987216 141987944 +
1 domain prediction
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Lj0g3v0283729.1
n.a. PREDICTED: GDP-mannose 3,5-epimerase-like isoform X1 [Cicer arietinum] gi|502117369|ref|XP_004495797.1| chr0 147094822 147099650 -
1 domain prediction
 –
Lj0g3v0283729.6
n.a. PREDICTED: GDP-mannose 3,5-epimerase-like [Glycine max] gi|356576698|ref|XP_003556467.1| chr0 147094822 147097143 -
1 domain prediction
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Lj0g3v0293869.1
n.a. NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao] gi|508718233|gb|EOY10130.1| chr0 152604074 152604341 -
1 domain prediction
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Lj0g3v0298519.1
n.a. PREDICTED: cinnamoyl-CoA reductase 1-like [Cicer arietinum] gi|502129455|ref|XP_004500311.1| chr0 155118073 155123260 +
1 domain prediction
 –
Lj0g3v0298519.2
n.a. PREDICTED: cinnamoyl-CoA reductase 1-like [Cicer arietinum] gi|502129455|ref|XP_004500311.1| chr0 155118073 155122215 +
1 domain prediction
 –
Lj0g3v0315639.1
n.a. PREDICTED: UDP-glucuronate 4-epimerase 3-like [Vitis vinifera] gi|359474329|ref|XP_003631433.1| chr0 164763643 164763877 +
1 domain prediction
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Lj0g3v0320419.1
n.a. PREDICTED: dihydroflavonol-4-reductase [Glycine max] gi|356548939|ref|XP_003542856.1| chr0 167213586 167214370 -
1 domain prediction
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Lj0g3v0327049.1
n.a. PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like isoform X1 [Cicer arietinum] gi|502143680|ref|XP_004505424.1| chr0 170963619 170967411 -
1 domain prediction
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Lj0g3v0334169.1
n.a. PREDICTED: cinnamoyl-CoA reductase 1-like [Cicer arietinum] gi|502144229|ref|XP_004505624.1| chr0 174890941 174891975 -
1 domain prediction
 –
Lj0g3v0361519.1
n.a. Dihydroflavonol-4-reductase [Medicago truncatula] gi|357516625|ref|XP_003628601.1| chr0 190435929 190441906 +
1 domain prediction
 –
Lj0g3v0361519.3
n.a. Dihydroflavonol-4-reductase [Medicago truncatula] gi|357516625|ref|XP_003628601.1| chr0 190443403 190446572 +
1 domain prediction
 –
Lj0g3v0361539.1
n.a. PREDICTED: cinnamoyl-CoA reductase 1-like [Cicer arietinum] gi|502144229|ref|XP_004505624.1| chr0 190448445 190448912 +
1 domain prediction
 –
Lj1g3v1649010.1
n.a. Dihydroflavonol-4-reductase [Medicago truncatula] gi|357465477|ref|XP_003603023.1| chr1 19693780 19702203 +
1 domain prediction
 –
Lj1g3v1649010.2
n.a. Dihydroflavonol-4-reductase [Medicago truncatula] gi|357465477|ref|XP_003603023.1| chr1 19700333 19702203 +
1 domain prediction
 –
Lj1g3v1798510.1
n.a. n.a. chr1 21604379 21609124 -
1 domain prediction
 –
Lj1g3v2124770.1
n.a. pterocarpan reductase [Lotus japonicus] gi|116077986|dbj|BAF34844.1| chr1 25389907 25392093 +
1 domain prediction
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Lj1g3v2580790.1
n.a. vestitone reductase [Glycine max] gi|351723693|ref|NP_001236520.1| chr1 29579666 29580254 +
1 domain prediction
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Lj1g3v2584610.1
n.a. Dihydroflavonol-4-reductase [Medicago truncatula] gi|357465477|ref|XP_003603023.1| chr1 29905714 29907065 -
1 domain prediction
 –
Lj1g3v2584620.1
n.a. Dihydroflavonol-4-reductase [Medicago truncatula] gi|357465477|ref|XP_003603023.1| chr1 29907386 29907702 -
1 domain prediction
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Lj1g3v2584630.1
n.a. n.a. chr1 29907386 29907727 -
1 domain prediction
 –
Lj1g3v2584640.1
n.a. Dihydroflavonol-4-reductase [Medicago truncatula] gi|357465477|ref|XP_003603023.1| chr1 29912085 29915317 -
1 domain prediction
 –