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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR23023
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 38 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.024s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0049159.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA2-like [Glycine max] gi|356511355|ref|XP_003524392.1| chr0 16619511 16622163 +
1 domain prediction
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Lj0g3v0049349.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA2-like [Glycine max] gi|356529622|ref|XP_003533388.1| chr0 16742786 16746402 +
1 domain prediction
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Lj0g3v0085899.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA3-like [Glycine max] gi|356533385|ref|XP_003535245.1| chr0 34509104 34512194 +
1 domain prediction
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Lj0g3v0101089.1
n.a. PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4-like [Cicer arietinum] gi|502124711|ref|XP_004498640.1| chr0 42815432 42815730 -
1 domain prediction
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Lj0g3v0101099.1
n.a. Dimethylaniline monooxygenase [Medicago truncatula] gi|357436843|ref|XP_003588697.1| chr0 42816185 42818337 -
1 domain prediction
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Lj0g3v0115209.1
n.a. Dehydrosqualene desaturase [Medicago truncatula] gi|357514935|ref|XP_003627756.1| chr0 50606707 50618759 -
1 domain prediction
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Lj0g3v0115209.2
n.a. PREDICTED: flavin-containing monooxygenase FMO GS-OX5-like [Cicer arietinum] gi|502158040|ref|XP_004511006.1| chr0 50606707 50618095 -
1 domain prediction
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Lj0g3v0115209.3
n.a. PREDICTED: flavin-containing monooxygenase FMO GS-OX5-like [Cicer arietinum] gi|502158040|ref|XP_004511006.1| chr0 50609231 50618162 -
1 domain prediction
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Lj0g3v0115209.4
n.a. PREDICTED: flavin-containing monooxygenase FMO GS-OX5-like [Cicer arietinum] gi|502158040|ref|XP_004511006.1| chr0 50613495 50617419 -
1 domain prediction
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Lj0g3v0162379.1
n.a. PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10-like [Cicer arietinum] gi|502137320|ref|XP_004503045.1| chr0 76558290 76558976 +
1 domain prediction
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Lj0g3v0220659.1
n.a. PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9-like [Cicer arietinum] gi|502178463|ref|XP_004516260.1| chr0 113055335 113059729 +
1 domain prediction
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Lj0g3v0220669.1
n.a. PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9-like [Cicer arietinum] gi|502178463|ref|XP_004516260.1| chr0 113055335 113059863 +
1 domain prediction
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Lj0g3v0226769.1
n.a. PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 3-like [Glycine max] gi|356548911|ref|XP_003542842.1| chr0 117160481 117162765 -
1 domain prediction
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Lj0g3v0241619.1
n.a. PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA3-like [Cicer arietinum] gi|502122410|ref|XP_004497732.1| chr0 125364516 125367628 -
1 domain prediction
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Lj0g3v0308259.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA8-like [Glycine max] gi|356537246|ref|XP_003537140.1| chr0 160924239 160927738 -
1 domain prediction
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Lj1g3v2036560.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA6-like [Glycine max] gi|356507869|ref|XP_003522685.1| chr1 23982085 23986890 +
1 domain prediction
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Lj1g3v3330000.1
n.a. PREDICTED: probable flavin-containing monooxygenase 1 [Vitis vinifera] gi|225428153|ref|XP_002278651.1| chr1 37913751 37915972 +
1 domain prediction
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Lj1g3v4528740.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA8-like [Glycine max] gi|356572315|ref|XP_003554314.1| chr1 53502790 53504610 +
1 domain prediction
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Lj1g3v4764550.1
n.a. PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10-like [Cicer arietinum] gi|502112410|ref|XP_004494322.1| chr1 57376410 57378105 -
1 domain prediction
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Lj1g3v4764680.3
n.a. PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10-like [Cicer arietinum] gi|502112410|ref|XP_004494322.1| chr1 57409399 57411939 -
1 domain prediction
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Lj2g3v2002280.1
n.a. Flavin-containing monooxygenase FMO GS-OX5 [Medicago truncatula] gi|357481971|ref|XP_003611271.1| chr2 30244846 30249617 +
1 domain prediction
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Lj2g3v2002280.2
n.a. Flavin-containing monooxygenase FMO GS-OX5 [Medicago truncatula] gi|357481971|ref|XP_003611271.1| chr2 30244846 30249617 +
1 domain prediction
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Lj3g3v3189630.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA10-like [Glycine max] gi|356507473|ref|XP_003522490.1| chr3 39390238 39392336 +
1 domain prediction
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Lj3g3v3189640.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA10-like [Glycine max] gi|356507473|ref|XP_003522490.1| chr3 39396640 39398724 +
1 domain prediction
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Lj4g3v1683220.1
n.a. PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9-like [Cicer arietinum] gi|502178463|ref|XP_004516260.1| chr4 24416741 24420268 -
1 domain prediction
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Lj4g3v1683220.2
n.a. PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9-like [Cicer arietinum] gi|502178463|ref|XP_004516260.1| chr4 24416741 24420268 -
1 domain prediction
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Lj4g3v2215030.1
n.a. PREDICTED: probable flavin-containing monooxygenase 1-like [Glycine max] gi|356545788|ref|XP_003541317.1| chr4 30501361 30506251 +
1 domain prediction
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Lj6g3v1162950.1
n.a. Flavin-dependent monooxygenase 1 [Theobroma cacao] gi|508782921|gb|EOY30177.1| chr6 14194439 14197472 -
1 domain prediction
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LotjaGi1g1v0192600.1
n.a. Flavin-containing monooxygenase; TAIR: AT5G07800.1 Flavin-binding monooxygenase family protein; Swiss-Prot: sp|Q9FF12|GSXL9_ARATH Flavin-containing monooxygenase FMO GS-OX-like 9; TrEMBL-Plants: tr|A0A151SLP0|A0A151SLP0_CAJCA Flavin-containing monooxygenase FMO GS-OX3; Found in the gene: LotjaGi1g1v0192600 LjG1.1_chr1 38068566 38079149 +
1 domain prediction
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LotjaGi1g1v0192600.2
n.a. Flavin-containing monooxygenase; TAIR: AT5G07800.1 Flavin-binding monooxygenase family protein; Swiss-Prot: sp|Q9FF12|GSXL9_ARATH Flavin-containing monooxygenase FMO GS-OX-like 9; TrEMBL-Plants: tr|A0A151SLP0|A0A151SLP0_CAJCA Flavin-containing monooxygenase FMO GS-OX3; Found in the gene: LotjaGi1g1v0192600 LjG1.1_chr1 38075164 38078261 +
1 domain prediction
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LotjaGi1g1v0556100.1
n.a. Flavin-containing monooxygenase; TAIR: AT1G19250.1 flavin-dependent monooxygenase 1; Swiss-Prot: sp|Q9LMA1|FMO1_ARATH Probable flavin-containing monooxygenase 1; TrEMBL-Plants: tr|A0A151RPM5|A0A151RPM5_CAJCA Putative flavin-containing monooxygenase 1; Found in the gene: LotjaGi1g1v0556100 LjG1.1_chr1 108831037 108835902 +
1 domain prediction
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LotjaGi2g1v0425500.1
n.a. Flavin-containing monooxygenase; TAIR: AT1G62620.1 Flavin-binding monooxygenase family protein; Swiss-Prot: sp|Q9SXD5|GSXL3_ARATH Flavin-containing monooxygenase FMO GS-OX-like 3; TrEMBL-Plants: tr|V7CGT0|V7CGT0_PHAVU Flavin-containing monooxygenase; Found in the gene: LotjaGi2g1v0425500 LjG1.1_chr2 92322088 92329806 +
1 domain prediction
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LotjaGi3g1v0062300.1
n.a. Flavin-containing monooxygenase; TAIR: AT1G62620.1 Flavin-binding monooxygenase family protein; Swiss-Prot: sp|Q9SXD5|GSXL3_ARATH Flavin-containing monooxygenase FMO GS-OX-like 3; TrEMBL-Plants: tr|G7LEJ7|G7LEJ7_MEDTR Flavin-containing monooxygenase; Found in the gene: LotjaGi3g1v0062300 LjG1.1_chr3 6579277 6593178 -
1 domain prediction
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LotjaGi4g1v0252600.1
n.a. Flavin-containing monooxygenase; TAIR: AT5G61290.1 Flavin-binding monooxygenase family protein; Swiss-Prot: sp|Q9FLK4|GSXL8_ARATH Flavin-containing monooxygenase FMO GS-OX-like 8; TrEMBL-Plants: tr|A0A0R0JXG8|A0A0R0JXG8_SOYBN Flavin-containing monooxygenase; Found in the gene: LotjaGi4g1v0252600 LjG1.1_chr4 60651005 60655051 -
1 domain prediction
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LotjaGi4g1v0252600.2
n.a. Flavin-containing monooxygenase; TAIR: AT5G61290.1 Flavin-binding monooxygenase family protein; Swiss-Prot: sp|Q9FLK4|GSXL8_ARATH Flavin-containing monooxygenase FMO GS-OX-like 8; TrEMBL-Plants: tr|A0A0R0JXG8|A0A0R0JXG8_SOYBN Flavin-containing monooxygenase; Found in the gene: LotjaGi4g1v0252600 LjG1.1_chr4 60651523 60654555 -
1 domain prediction
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LotjaGi4g1v0321100.1
n.a. Flavin-containing monooxygenase family protein; TAIR: AT1G19250.1 flavin-dependent monooxygenase 1; Swiss-Prot: sp|Q9LMA1|FMO1_ARATH Probable flavin-containing monooxygenase 1; TrEMBL-Plants: tr|I1LY93|I1LY93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0321100 LjG1.1_chr4 69872735 69880903 -
1 domain prediction
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LotjaGi4g1v0321100.2
n.a. Flavin containing monooxygenase family protein; TAIR: AT1G19250.1 flavin-dependent monooxygenase 1; Swiss-Prot: sp|Q9LMA1|FMO1_ARATH Probable flavin-containing monooxygenase 1; TrEMBL-Plants: tr|A0A1J7I216|A0A1J7I216_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0321100 LjG1.1_chr4 69876477 69877536 -
1 domain prediction
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LotjaGi6g1v0221300.1
n.a. Flavin containing monooxygenase-like protein, putative; TAIR: AT1G19250.1 flavin-dependent monooxygenase 1; Swiss-Prot: sp|Q9LMA1|FMO1_ARATH Probable flavin-containing monooxygenase 1; TrEMBL-Plants: tr|A0A072V7P6|A0A072V7P6_MEDTR Flavin containing monooxygenase-like protein, putative; Found in the gene: LotjaGi6g1v0221300 LjG1.1_chr6 52545310 52549219 -
1 domain prediction
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