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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR31621
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 16 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.018s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0101379.1
n.a. Uncharacterized protein TCM_029803 [Theobroma cacao] gi|508780904|gb|EOY28160.1| chr0 43017523 43018499 +
1 domain prediction
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Lj1g3v2975930.1
n.a. Gb:AAC24089.1 [Theobroma cacao] gi|508711578|gb|EOY03475.1| chr1 33710481 33711178 -
1 domain prediction
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Lj1g3v4467790.1
n.a. Uncharacterized protein TCM_029803 [Theobroma cacao] gi|508780904|gb|EOY28160.1| chr1 52350183 52350918 -
1 domain prediction
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Lj4g3v0200200.1
n.a. Uncharacterized protein TCM_029803 [Theobroma cacao] gi|508780904|gb|EOY28160.1| chr4 2542613 2543613 +
1 domain prediction
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Lj4g3v0473880.1
n.a. Uncharacterized protein TCM_029803 [Theobroma cacao] gi|508780904|gb|EOY28160.1| chr4 7504596 7505084 -
1 domain prediction
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Lj6g3v1903450.1
n.a. DUF679 domain membrane protein 2 [Theobroma cacao] gi|508714435|gb|EOY06332.1| chr6 21348597 21349462 +
1 domain prediction
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Lj6g3v2006650.1
n.a. Uncharacterized protein TCM_029803 [Theobroma cacao] gi|508780904|gb|EOY28160.1| chr6 23591500 23592422 +
1 domain prediction
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Lj6g3v2275140.1
n.a. Uncharacterized protein TCM_006175 [Theobroma cacao] gi|508705172|gb|EOX97068.1| chr6 26740937 26742207 +
1 domain prediction
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LotjaGi1g1v0504000.1
n.a. DUF679 domain membrane protein; TAIR: AT1G09157.1 transmembrane protein, putative (DUF679); Swiss-Prot: sp|Q5M4E9|XERS_STRT2 Tyrosine recombinase XerS; TrEMBL-Plants: tr|G7L1Z6|G7L1Z6_MEDTR DUF679 domain membrane protein; Found in the gene: LotjaGi1g1v0504000 LjG1.1_chr1 102171783 102172442 -
2 domain predictions
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LotjaGi1g1v0504300.1
n.a. DUF679 domain membrane protein; TAIR: AT1G09157.1 transmembrane protein, putative (DUF679); Swiss-Prot: sp|Q5M4E9|XERS_STRT2 Tyrosine recombinase XerS; TrEMBL-Plants: tr|G7L1Z6|G7L1Z6_MEDTR DUF679 domain membrane protein; Found in the gene: LotjaGi1g1v0504300 LjG1.1_chr1 102192836 102193489 +
2 domain predictions
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LotjaGi2g1v0095600.1
n.a. Purine ribonucleoside efflux pump NepI; TAIR: AT5G46090.1 transmembrane protein, putative (DUF679); Swiss-Prot: sp|Q0TB40|NEPI_ECOL5 Purine ribonucleoside efflux pump NepI; TrEMBL-Plants: tr|A0A0L9VM03|A0A0L9VM03_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0095600 LjG1.1_chr2 31297708 31298370 -
2 domain predictions
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LotjaGi3g1v0242100.1
n.a. DUF679 domain membrane protein; TAIR: AT5G46090.1 transmembrane protein, putative (DUF679); Swiss-Prot: sp|B6JJ40|KHSE_OLICO Homoserine kinase; TrEMBL-Plants: tr|I1KEY1|I1KEY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0242100 LjG1.1_chr3 39351144 39352048 -
2 domain predictions
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LotjaGi4g1v0417100.1
n.a. transmembrane protein, putative (DUF679); TAIR: AT5G46090.1 transmembrane protein, putative (DUF679); Swiss-Prot: sp|B8F5Q8|RECR_HAEPS Recombination protein RecR; TrEMBL-Plants: tr|I1KEY1|I1KEY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0417100 LjG1.1_chr4 79276011 79276702 +
2 domain predictions
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LotjaGi6g1v0303400.1
n.a. transmembrane protein, putative (DUF679); TAIR: AT3G21550.1 transmembrane protein, putative (DUF679 domain membrane protein 2); Swiss-Prot: sp|Q8DG12|Y039_VIBVU UPF0061 protein VV1_0039; TrEMBL-Plants: tr|G7IFN3|G7IFN3_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi6g1v0303400 LjG1.1_chr6 62096478 62097366 -
2 domain predictions
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LotjaGi6g1v0328100.1
n.a. transmembrane protein, putative (DUF679); TAIR: AT5G46090.1 transmembrane protein, putative (DUF679); Swiss-Prot: sp|Q72H19|TGT_THET2 Queuine tRNA-ribosyltransferase; TrEMBL-Plants: tr|I3SX54|I3SX54_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0328100 LjG1.1_chr6 64319552 64320172 +
2 domain predictions
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LotjaGi6g1v0364200.1
n.a. transmembrane protein, putative (DUF679); TAIR: AT3G02430.1 transmembrane protein, putative (DUF679); Swiss-Prot: sp|Q9LYN3|PMTM_ARATH Probable methyltransferase PMT22; TrEMBL-Plants: tr|A0A1J7FU84|A0A1J7FU84_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0364200 LjG1.1_chr6 67558980 67560561 +
2 domain predictions
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