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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SSF52374
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 138 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.038s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0060769.1
n.a. PREDICTED: nicotinamide mononucleotide adenylyltransferase 1-like isoform X1 [Cicer arietinum] gi|502099589|ref|XP_004491516.1| chr0 20266428 20273652 +
1 domain prediction
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Lj0g3v0063869.1
n.a. PREDICTED: valine--tRNA ligase-like [Cicer arietinum] gi|502091866|ref|XP_004489655.1| chr0 21800889 21815366 -
1 domain prediction
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Lj0g3v0068519.1
n.a. PREDICTED: nicotinamide mononucleotide adenylyltransferase 1-like isoform X1 [Cicer arietinum] gi|502099589|ref|XP_004491516.1| chr0 24535068 24537371 +
1 domain prediction
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Lj0g3v0068519.2
n.a. PREDICTED: nicotinamide mononucleotide adenylyltransferase 1-like isoform X1 [Cicer arietinum] gi|502099589|ref|XP_004491516.1| chr0 24535068 24538402 +
1 domain prediction
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Lj0g3v0166889.1
n.a. PREDICTED: tryptophanyl-tRNA synthetase-like [Glycine max] gi|356518366|ref|XP_003527850.1| chr0 79298479 79305888 -
1 domain prediction
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Lj0g3v0203509.1
n.a. PREDICTED: tyrosine--tRNA ligase-like [Cicer arietinum] gi|502129554|ref|XP_004500343.1| chr0 100885151 100887039 -
1 domain prediction
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Lj0g3v0266329.1
n.a. PREDICTED: methionyl-tRNA synthetase-like [Glycine max] gi|356536480|ref|XP_003536765.1| chr0 137894362 137895350 +
1 domain prediction
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Lj0g3v0292869.1
n.a. PREDICTED: nicotinamide mononucleotide adenylyltransferase 1-like isoform X1 [Cicer arietinum] gi|502099589|ref|XP_004491516.1| chr0 152007347 152010182 +
1 domain prediction
 –
Lj0g3v0292869.2
n.a. PREDICTED: nicotinamide mononucleotide adenylyltransferase 1-like isoform X1 [Cicer arietinum] gi|502099589|ref|XP_004491516.1| chr0 152007347 152010182 +
1 domain prediction
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Lj0g3v0340979.1
n.a. PREDICTED: methionyl-tRNA synthetase-like [Glycine max] gi|356575379|ref|XP_003555819.1| chr0 178626823 178630463 -
1 domain prediction
 –
Lj0g3v0340979.2
n.a. PREDICTED: methionyl-tRNA synthetase-like [Glycine max] gi|356575379|ref|XP_003555819.1| chr0 178626823 178630463 -
1 domain prediction
 –
Lj0g3v0358999.1
n.a. PREDICTED: ATP sulfurylase 2-like [Cicer arietinum] gi|502148790|ref|XP_004507270.1| chr0 189005669 189009834 -
1 domain prediction
 –
Lj1g3v1856380.1
n.a. PREDICTED: cysteinyl-tRNA synthetase-like [Glycine max] gi|356515262|ref|XP_003526320.1| chr1 22460570 22466639 -
1 domain prediction
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Lj1g3v1856380.2
n.a. PREDICTED: cysteinyl-tRNA synthetase-like [Glycine max] gi|356515262|ref|XP_003526320.1| chr1 22460570 22466639 -
1 domain prediction
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Lj1g3v1856380.3
n.a. PREDICTED: cysteine--tRNA ligase-like isoform X2 [Cicer arietinum] gi|502132428|ref|XP_004501355.1| chr1 22462865 22466639 -
1 domain prediction
 –
Lj1g3v2580590.1
n.a. Ethanolamine-phosphate cytidylyltransferase [Medicago truncatula] gi|357506813|ref|XP_003623695.1| chr1 29504020 29513488 -
1 domain prediction
 –
Lj1g3v2580590.2
n.a. PREDICTED: ethanolamine-phosphate cytidylyltransferase-like [Glycine max] gi|356530143|ref|XP_003533643.1| chr1 29504020 29513488 -
1 domain prediction
 –
Lj1g3v3137930.1
n.a. PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Glycine max] gi|356497127|ref|XP_003517414.1| chr1 35773209 35777625 +
1 domain prediction
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Lj1g3v3918090.1
n.a. PREDICTED: leucine--tRNA ligase, cytoplasmic-like isoform X2 [Cicer arietinum] gi|502147205|ref|XP_004506692.1| chr1 45749052 45749781 +
1 domain prediction
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Lj1g3v4693050.1
n.a. RecName: Full=Pantoate--beta-alanine ligase; AltName: Full=Pantoate-activating enzyme; AltName: Full=Pantothenate synthetase; Flags: Precursorgi|2292921|emb|CAA71302.1| pantoate--beta-alanine ligase [Lotus japonicus] gi|14285652|sp|O24035.3|PANC_LOTJA chr1 55759461 55762689 -
1 domain prediction
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Lj1g3v4693060.1
n.a. n.a. chr1 55759579 55763229 -
1 domain prediction
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Lj2g3v0878950.1
n.a. PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502164060|ref|XP_004513035.1| chr2 13512416 13520834 -
1 domain prediction
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Lj2g3v0879000.1
n.a. PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Cicer arietinum] gi|502164143|ref|XP_004513061.1| chr2 13549167 13557342 +
1 domain prediction
 –
Lj2g3v0879000.3
n.a. PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Cicer arietinum] gi|502164143|ref|XP_004513061.1| chr2 13549167 13554117 +
1 domain prediction
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Lj2g3v1472980.1
n.a. PREDICTED: valyl-tRNA synthetase-like [Glycine max] gi|356563701|ref|XP_003550098.1| chr2 23618530 23626746 -
1 domain prediction
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Lj2g3v1734760.1
n.a. Phosphopantetheine adenylyltransferase [Medicago truncatula] gi|357483515|ref|XP_003612044.1| chr2 26816422 26819683 +
1 domain prediction
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Lj2g3v3292420.1
n.a. PREDICTED: nicotinamide mononucleotide adenylyltransferase 1-like isoform X1 [Cicer arietinum] gi|502099589|ref|XP_004491516.1| chr2 41769707 41772379 -
1 domain prediction
 –
Lj2g3v3292420.2
n.a. PREDICTED: nicotinamide mononucleotide adenylyltransferase 1-like isoform X1 [Cicer arietinum] gi|502099589|ref|XP_004491516.1| chr2 41769707 41772984 -
1 domain prediction
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Lj3g3v0461420.1
n.a. PREDICTED: tyrosine--tRNA ligase-like [Cicer arietinum] gi|502129554|ref|XP_004500343.1| chr3 4871832 4872931 -
1 domain prediction
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Lj3g3v0461620.1
n.a. PREDICTED: tyrosine--tRNA ligase-like [Cicer arietinum] gi|502129554|ref|XP_004500343.1| chr3 4899313 4901218 -
1 domain prediction
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Lj3g3v0592200.1
n.a. PREDICTED: tryptophan--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502173440|ref|XP_004515330.1| chr3 6393985 6402969 +
1 domain prediction
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Lj3g3v0642560.1
n.a. PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502155737|ref|XP_004510174.1| chr3 6954119 6960363 +
1 domain prediction
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Lj3g3v3032100.1
n.a. PREDICTED: leucine--tRNA ligase, cytoplasmic-like isoform X1 [Cicer arietinum] gi|502147203|ref|XP_004506691.1| chr3 37916340 37922732 +
1 domain prediction
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Lj3g3v3032100.2
n.a. PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Glycine max] gi|356497127|ref|XP_003517414.1| chr3 37916580 37922732 +
1 domain prediction
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Lj3g3v3032100.3
n.a. PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Glycine max] gi|356497127|ref|XP_003517414.1| chr3 37918412 37922732 +
1 domain prediction
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Lj3g3v3599450.1
n.a. PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502144299|ref|XP_004505648.1| chr3 43532300 43545146 +
1 domain prediction
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Lj3g3v3627890.1
n.a. PREDICTED: probable methionyl-tRNA synthetase-like [Glycine max] gi|356543424|ref|XP_003540160.1| chr3 43772719 43781992 -
1 domain prediction
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Lj4g3v0134610.1
n.a. PREDICTED: leucyl-tRNA synthetase-like [Glycine max] gi|356522021|ref|XP_003529648.1| chr4 1429652 1438399 +
1 domain prediction
 –
Lj4g3v0134610.2
n.a. PREDICTED: leucyl-tRNA synthetase-like [Glycine max] gi|356522021|ref|XP_003529648.1| chr4 1429652 1436749 +
1 domain prediction
 –
Lj4g3v0134610.3
n.a. PREDICTED: leucyl-tRNA synthetase-like [Glycine max] gi|356522021|ref|XP_003529648.1| chr4 1429652 1438399 +
1 domain prediction
 –
Lj4g3v2120600.1
n.a. PREDICTED: glutaminyl-tRNA synthetase-like isoform 1 [Glycine max] gi|356536302|ref|XP_003536678.1| chr4 29114550 29123188 +
1 domain prediction
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Lj4g3v3015090.1
n.a. PREDICTED: ethanolamine-phosphate cytidylyltransferase-like [Glycine max] gi|356513223|ref|XP_003525313.1| chr4 40339651 40344267 +
1 domain prediction
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Lj5g3v0614400.1
n.a. PREDICTED: tyrosyl-tRNA synthetase-like [Glycine max] gi|356496773|ref|XP_003517240.1| chr5 7215252 7221248 -
1 domain prediction
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Lj5g3v0921280.1
n.a. PREDICTED: tyrosyl-tRNA synthetase-like [Glycine max] gi|356496773|ref|XP_003517240.1| chr5 13772622 13776770 +
1 domain prediction
 –
Lj5g3v0921280.2
n.a. PREDICTED: tyrosyl-tRNA synthetase-like [Glycine max] gi|356496773|ref|XP_003517240.1| chr5 13773544 13776770 +
1 domain prediction
 –
Lj5g3v1533470.1
n.a. PREDICTED: probable glutamyl-tRNA synthetase, cytoplasmic-like [Glycine max] gi|356534931|ref|XP_003536004.1| chr5 22497785 22502045 -
1 domain prediction
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Lj5g3v2028360.1
n.a. PREDICTED: valyl-tRNA synthetase-like isoform 1 [Glycine max] gi|356535908|ref|XP_003536484.1| chr5 28644475 28651121 +
1 domain prediction
 –
Lj5g3v2028360.2
n.a. PREDICTED: valyl-tRNA synthetase-like isoform 1 [Glycine max] gi|356535908|ref|XP_003536484.1| chr5 28644475 28653812 +
1 domain prediction
 –
Lj5g3v2045020.1
n.a. PREDICTED: ATP sulfurylase 1, chloroplastic-like [Cicer arietinum] gi|502119550|ref|XP_004496657.1| chr5 28919768 28923182 -
1 domain prediction
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Lj5g3v2179930.1
n.a. Nucleotidylyl transferase superfamily protein [Theobroma cacao] gi|508708163|gb|EOY00060.1| chr5 31386565 31397332 +
1 domain prediction
 –