Domain Predictions — View

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TIGR03144

Source: TIGRFAM

Description

cytochr_II_ccsB: cytochrome c-type biogenesis protein CcsB

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0017004 View details of GO:0017004 AmiGO InterPro QuickGO	Biological process	Cytochrome complex assembly	The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions.	Subterm of GO:0034622

Associated Lotus transcripts 3

Transcript	Name	Description	Predicted domains	Domain count
Ljchlorog3v0013290.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytochrome c biogenesis protein [Lotus japonicus] gi\|13518486\|ref\|NP_084844.1\|	Domains CYTOPLASMIC_DOMAIN IPR002541 IPR017562 MF_01391 NON_CYTOPLASMIC_DOMAIN PF01578 PTHR30071 PTHR30071:SF8 TIGR03144 TMhelix TRANSMEMBRANE	11
LotjaGi5g1v0223100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytochrome c biogenesis protein CcsA; TAIR: ATCG01040.1 Cytochrome C assembly protein (ChrC); Swiss-Prot: sp\|Q9BBP4\|CCSA_LOTJA Cytochrome c biogenesis protein CcsA; TrEMBL-Plants: tr\|A0A0K0LNH5\|A0A0K0LNH5_WISFL Cytochrome c biogenesis protein CcsA; Found in the gene: LotjaGi5g1v0223100	Domains CYTOPLASMIC_DOMAIN IPR002541 IPR017562 MF_01391 NON_CYTOPLASMIC_DOMAIN PF01578 PTHR30071 PTHR30071:SF1 TIGR03144 TMhelix TRANSMEMBRANE	11
LotjaGi5g1v0223100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytochrome c biogenesis protein CcsA; TAIR: ATCG01040.1 Cytochrome C assembly protein (ChrC); Swiss-Prot: sp\|Q9BBP4\|CCSA_LOTJA Cytochrome c biogenesis protein CcsA; TrEMBL-Plants: tr\|A0A0K0LNH5\|A0A0K0LNH5_WISFL Cytochrome c biogenesis protein CcsA; Found in the gene: LotjaGi5g1v0223100	Domains CYTOPLASMIC_DOMAIN IPR002541 IPR017562 MF_01391 NON_CYTOPLASMIC_DOMAIN PF01578 PTHR30071 PTHR30071:SF1 TIGR03144 TMhelix TRANSMEMBRANE	11

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
TRANSMEMBRANE	Phobius	1	33.33