Gene Browser — Tools

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Viewer

Data viewer for L. japonicus.

For a more full-fledged search, please use the TREX tool.

Invalid gene ID format detected. Please ensure that your gene ID follows the formats:

MG20 v3.0: Lj{chr}g{version}v{id}, e.g. Lj4g3v0281040
Gifu v1.2: LotjaGi{chr}g{version}v{id}, e.g. LotjaGi4g1v0024900

Identifier

Unsure about what identifiers to use? Pick an example from the tabs below:

Examples:
Lj2g3v3373110LjNin (Gene)
Lj2g3v3373110.1LjNin (Transcript/Protein)
LotjaGi1g1v0001500LjNin (Gene)Gifu v1.2
LotjaGi1g1v0001500.1LjNin (Transcript/Protein)Gifu v1.2

Examples:
30010101Danish line
DK02-030010101Danish line (alternative format)
A00005Japanese line

Examples:
IPR000719InterPro
cd14066CDD
G3DSA:3.90.550.10Gene3D
MF_01928Hamap
PTHR24420PANTHER
PS50011PatternScan
PF00069Pfam
PIRSF030250PIRSF
PR00019PRINTS
PD005521ProDom
PS00108ProSite Patterns
PS50011ProSite Profiles
SFLDF00063SFLD
SM00369SMART
SSF52047SUPERFAMILY
TIGR01151TIGRFAM

Examples:
GO:00055154019 transcripts
GO:00055153528 transcripts
GO:00055243310 transcripts
GO:00055242626 transcripts
GO:00551141867 transcripts
GO:00551141695 transcripts
GO:00036771678 transcripts
GO:00046721651 transcripts
GO:00064681649 transcripts
GO:00160201584 transcripts