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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0267479 |
| Transcript ID | Lj0g3v0267479.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: clathrin heavy chain 1-like [Glycine max] gi|356495434|ref|XP_003516582.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 1514 | 1514 | 0 | – | |
| Gene3D | 1 | 186 | 186 | 6.10E-69 | ||
| SUPERFAMILY | 1 | 153 | 153 | 1.44E-53 | ||
| PIRSF | 1 | 1496 | 1496 | 0 | ||
| PANTHER | 1 | 1514 | 1514 | 0 | – | |
| Pfam | 154 | 177 | 24 | 3.40E-07 | ||
| SUPERFAMILY | 155 | 310 | 156 | 2.88E-52 | ||
| Pfam | 179 | 244 | 66 | 8.20E-30 | – | |
| SUPERFAMILY | 267 | 603 | 337 | 1.58E-82 | ||
| ProSiteProfiles | 361 | 507 | 147 | 33.742 | ||
| SMART | 361 | 503 | 143 | 4.70E-31 | ||
| Pfam | 367 | 500 | 134 | 2.10E-18 | ||
| SMART | 510 | 652 | 143 | 2.90E-38 | ||
| ProSiteProfiles | 510 | 652 | 143 | 33.118 | ||
| Pfam | 511 | 650 | 140 | 1.70E-21 | ||
| Gene3D | 520 | 749 | 230 | 2.90E-41 | ||
| ProSiteProfiles | 657 | 796 | 140 | 37.674 | ||
| SMART | 657 | 796 | 140 | 3.60E-42 | ||
| Pfam | 660 | 785 | 126 | 1.20E-28 | ||
| SUPERFAMILY | 711 | 877 | 167 | 1.50E-36 | ||
| Pfam | 803 | 941 | 139 | 1.10E-31 | ||
| SMART | 803 | 948 | 146 | 2.40E-42 | ||
| ProSiteProfiles | 803 | 948 | 146 | 42.182 | ||
| SUPERFAMILY | 862 | 1005 | 144 | 2.04E-28 | ||
| ProSiteProfiles | 952 | 1093 | 142 | 35.901 | ||
| SMART | 952 | 1093 | 142 | 1.50E-38 | ||
| Pfam | 955 | 1091 | 137 | 8.40E-28 | ||
| SUPERFAMILY | 1006 | 1341 | 336 | 1.67E-103 | ||
| Gene3D | 1007 | 1345 | 339 | 1.50E-145 | ||
| SMART | 1098 | 1244 | 147 | 5.20E-42 | ||
| ProSiteProfiles | 1098 | 1244 | 147 | 41.525 | ||
| Pfam | 1099 | 1241 | 143 | 3.00E-28 | ||
| SMART | 1247 | 1406 | 160 | 3.40E-42 | ||
| ProSiteProfiles | 1247 | 1390 | 144 | 37.609 | ||
| Pfam | 1249 | 1389 | 141 | 1.50E-26 | ||
| Coils | 1287 | 1307 | 21 | – | – | |
| Gene3D | 1346 | 1467 | 122 | 1.80E-29 | ||
| Coils | 1427 | 1462 | 36 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural molecule activity | The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Cellular component | Clathrin coat of trans-Golgi network vesicle | A clathrin coat found on a vesicle of the trans-Golgi network. | ||
| Cellular component | Clathrin coat of coated pit | The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex. | ||
| Molecular function | Clathrin light chain binding | Interacting selectively and non-covalently with a clathrin light chain. | ||
| Cellular component | Clathrin complex | A protein complex that consists of three clathrin heavy chains and three clathrin light chains, organized into a symmetrical three-legged structure called a triskelion. In clathrin-coated vesicles clathrin is the main component of the coat and forms a polymeric mechanical scaffold on the vesicle surface. |
Expression pattern of Lj0g3v0267479.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0267479.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.