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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0619310 |
| Transcript ID | Lj3g3v0619310.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ribose-phosphate pyrophosphokinase 5, chloroplastic-like [Glycine max] gi|356504490|ref|XP_003521029.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 1 | 20 | 20 | – | – | |
| Phobius | 4 | 12 | 9 | – | – | |
| Phobius | 13 | 20 | 8 | – | – | |
| Phobius | 21 | 294 | 274 | – | – | |
| PANTHER | 77 | 294 | 218 | 1.20E-187 | – | |
| PANTHER | 77 | 294 | 218 | 1.20E-187 | – | |
| Gene3D | 86 | 244 | 159 | 2.90E-72 | ||
| Pfam | 88 | 204 | 117 | 1.80E-50 | ||
| SMART | 88 | 204 | 117 | 3.00E-81 | – | |
| TIGRFAM | 89 | 294 | 206 | 1.10E-77 | ||
| SUPERFAMILY | 89 | 240 | 152 | 4.91E-52 | ||
| ProSitePatterns | 212 | 227 | 16 | – | ||
| Gene3D | 245 | 294 | 50 | 2.10E-12 | ||
| SUPERFAMILY | 247 | 291 | 45 | 5.67E-09 | ||
| CDD | 247 | 290 | 44 | 2.88E-05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | Ribose phosphate diphosphokinase activity | Catalysis of the reaction: D-ribose 5-phosphate + ATP = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + 2 H(+). | ||
| Biological process | Nucleoside metabolic process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). | ||
| Biological process | Ribonucleoside monophosphate biosynthetic process | The chemical reactions and pathways resulting in the formation of a ribonucleoside monophosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with phosphate on the sugar. | ||
| Biological process | Nucleotide biosynthetic process | The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates). | ||
| Biological process | Cellular biosynthetic process | The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. |
Expression pattern of Lj3g3v0619310.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0619310.1, powered by CORGI.
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