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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0251100 |
| Transcript ID | LotjaGi1g1v0251100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine protein phosphatase 7 long form isogeny; TAIR: AT1G48120.1 serine/threonine-protein phosphatase 7 long form-like protein; Swiss-Prot: sp|Q9LNG5|PPP7L_ARATH Serine/threonine-protein phosphatase 7 long form homolog; TrEMBL-Plants: tr|V7B7N1|V7B7N1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0251100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:60278050..60281459) extracted from Lotus japonicus Gifu genome v1.2.
CTCATTTCACTTTTTCATTTTTCTTCCTTCTTCTGCAGACCCATTCTCTACTTCTTCTTCTATATATGTTATGCCAGTCC TGATATATACACACCTTCTACAGTAAACCTCTCCATTTCCACCTTGTCCACGTAAGCATCTGTTGAGCATTTTCCATGTC AGCTTACAGGTTGGATGAGAGAGGTAAAATCAAGTTGGATGAGAGAGATTGGAAAATTGAAAGGGGGCAAACGAAATTTT GCTTGCAGCCTCTCTCTCATTAGACAGCAGCCTCTCTCTCATCTTCACCTCTAGGGTTTTCTTGCTCACCCACCGTCTCC CCCACCATTTTGCTCAGCCACCGTCGCCCCCAATAAAGCAAGTCCCCTCCGCTCGGATCGGTCTTCCACGTTGTCGCTGG GTTCGGTCCTCCCTCGTCCCATCCGCGGCTCGCCCTCACTCTCTCTTTCCCTAGTTCAGAACCACCCTTTCTCCCCCTTG AGAAACAAGGTATGATGGTGCTTGTTATTGTATCTATTTCCAATCAAAATCAACGTCTGGGCCTGATTATTTTCCCCCAA ATGCATGTATTTGTTGAGAAATTTGATTTTGGTGGATTGATATGGGTTTAGAGAACCTCCCCTGAATAATTATGATATGG GTTTAGAGAACCTCCCCTGAATAAATTTTCTGTTGTATTGAATTAGTTTCATTTGGGTGATGTAAAATTTTCTTTTTATT TCTTGTGGGTATTTTTCTTTGGGTGAATTAGCTGGATTGATTTAGTTGTATTGATATGGGTTTAGAGAACCTCCCCTGCA CATTTGGGTGCTGTTTTTTTTTTGTACCCATGGATTTGAACATTCCTCATTACTTTCTGGATCAATAAGTTTGTGTACAT GATATCCATGCGCATCTATCACATGTTCTGATAGAGCTGCTACTGTATCTAGGCCAGAGAAACCTCCTATCAAGCATGTA TATGTGAGGCACCAAGCTGGCACTAGTGAGGTTAACTAACTGTAGTTGACAGTTAGTGTTAAATAAAAGAGGATTAACTA ACTGCAGTTAATGGTTAGGGTTAGGATATACTATAAATTGGAGGATTAACTTAACTCCTCAGTTAGCATTCTTCTGGTAG ATAGAAATTGGTTAGAACTGATTGTGGAATCAGTTAGGGGTTTCCTTCCTTCCAGAAGTTTCTTGTTCATTCTCTGTTTT CAGTTTCTCTCAAACTAGAATCTCCATTGTTACTGGTTGAGAGCTTTGAGTCTATTGTATAGTGATTTTGTGTGAAATTG CATTACCAGTTCTAACATGTTCTGTGTCCATTAAGAGGCACTGATTTTGATTCCGCTTGTAAAATGCTCCTAGTATTTTC TTCAGAAACCATGTTTGGCACATGTGCTTTCTGAGATTCCTTATGGTGAAGACTCATACATGTCTCAATTTGCTGTTGTT CCTCCTCCCACACCAAGCCCAGCTGCATCCACTCACCCATTTATGCAAAATATGGTGAGTTTTGCTTTTGATTGGGTTTT CTCTACCATCCTGCTTCAATTAATTTTTGTTTTGTCCTCATTCAACATTCCTTTGTGTTTCCGTGGAGTTTGTTAGTTTT TAAAATAAGTCTCGTGGTACTTTCTTATTTTGCTTGAAAGTACACTTATATTTCACAAAACATGAACACCAAAATTGAAC ATGCATTTTCATTTTTTTTCCAGGTACGTTTTAGGCACACTTGTAAGACAAAGTGGCTTGTTAAGGTGAATAAGCATCTA ACAGATGCCCAAAGGTCTCGAATTCAGAGAACCCCGTTTCACTCATTAATGGAAATGCCCGAAAAATTACGTACCAATTG CATATTGTTGTCTAACTTAGAGAGTCGGTGGGAGGAGAACCGTTTCGGTTTTAAAATACAAGATAATGTAGTGCCTTTTA CTCCACTAGATGTATGTTTCTCACTAGGATTGCGTCTAGTTGGACTAAATGTGAATTACAATGGAGATGAAGATGCTGAA TGCCATACCAAAGGTTTATTTAAGGGGGAAGAAATAACAGTTAAGACAATAGTTAAGCAACTAAGGAGGCATAAAAGTGA TGACAAGGTTGATGACTTTTGTAGGCTATATATCCTTCTTGTGTTTGCAACGTTTTATTTCCCGCAGAGTTCAACCAGTT GTTTGTTGCGAATGTTAGATAATCTAAATTCATTGCAAGAATATAGTTGGGGTGTTGCTGTTTATGATACCTTGGTTCTA AGCTTGAGTCGTTGTGCAAAATGCTTGAATAAGTCAAAGAATAAATCAGTTGTCAGGATAACCGGTTGTGCAGCCATATT ACAGGTACTTTATAGTATGTTTATTATTATTGCTAAAATTTGTTATGGTTGTTTAAAATATTTTATTTGCATTTCTTCAT TTAACTAAATGATTTTCTGGTGCTGATATAGATTTGGGCTTTGGAGCACATGTTCTTGCGTGGAAGACCTATATGTACTG GTACCATACGGTCATTTCCGCGATTTTTACGTTGGCAAAATGTTGCAATGCGCAAGGATAAAATACTGAAAGCATTTGAA GACAATCGTGTAAGAATGCAATTCAGTAAATTTTAAAATTATCGGGGTAATACTATAAGAAATATTTGATTTTGTATATT CATTGACAGGTACTTGAGAAGTTGGCTGCCACAAGTGAAGAGCTACAGTATGATGTTGTGATGGAAGCAATGCAAAAGGC ACCAAGCGGGTTTCCCCATAGGCACAAGCTGAATTTTTATGCGGAGAGAGAGAGACATGTAAACATCAGGTCATAGTTGC ACACAAGGAGATTAAGGAAATGATATCTTTTATTCAAAATGATTTCATGATGATTAAGCAAGTTCTTCAACCAACGGTTG AGTCAAGCCCACAAACTATTAATTACACATGTGAGGATGAAGCAAACACATGGTGTGACGATAATCGTAGTTCGGCCAAA GATCATGATGAATGCCACATTGAGGAACAAAATCTGCAAGTAATATCCAACATATACACACGTCTTAAGGATGAACCAAG AAAGCGCATAGAAAGTGCAGTAACTAGATCACCTTGGACTACATATCAGAGGAGACGCAACAAGGGCAAGGAGGTTAAAG CTGGAAACTTGTAACGGTTTTTGTTAAGTTCTTTATTGAAGAGAATGTTTTAAGTAGAAAATCTTTGTTAATTAATGGGG TAACTTTGATGTACTATGTAGATGCACCATCTATGGTGGTTTTGTTATGTCCATTGAGAATAGGAGTCCTAATCCTATTC ATGTGTTTTAGACATATATTTGTAGCCTTTATTAAGAGCAACTACCCGCAAAGTCAAACATTACTACCCAAGTATATGTA ATTGATACTTTGTTATGTGCCACTGAGATTACAGGCTCTTAATCTACTTC
CDS sequence (LotjaGi1g1v0251100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCAATTTGCTGTTGTTCCTCCTCCCACACCAAGCCCAGCTGCATCCACTCACCCATTTATGCAAAATATGGTACG TTTTAGGCACACTTGTAAGACAAAGTGGCTTGTTAAGGTGAATAAGCATCTAACAGATGCCCAAAGGTCTCGAATTCAGA GAACCCCGTTTCACTCATTAATGGAAATGCCCGAAAAATTACGTACCAATTGCATATTGTTGTCTAACTTAGAGAGTCGG TGGGAGGAGAACCGTTTCGGTTTTAAAATACAAGATAATGTAGTGCCTTTTACTCCACTAGATGTATGTTTCTCACTAGG ATTGCGTCTAGTTGGACTAAATGTGAATTACAATGGAGATGAAGATGCTGAATGCCATACCAAAGGTTTATTTAAGGGGG AAGAAATAACAGTTAAGACAATAGTTAAGCAACTAAGGAGGCATAAAAGTGATGACAAGGTTGATGACTTTTGTAGGCTA TATATCCTTCTTGTGTTTGCAACGTTTTATTTCCCGCAGAGTTCAACCAGTTGTTTGTTGCGAATGTTAGATAATCTAAA TTCATTGCAAGAATATAGTTGGGGTGTTGCTGTTTATGATACCTTGGTTCTAAGCTTGAGTCGTTGTGCAAAATGCTTGA ATAAGTCAAAGAATAAATCAGTTGTCAGGATAACCGGTTGTGCAGCCATATTACAGATTTGGGCTTTGGAGCACATGTTC TTGCGTGGAAGACCTATATGTACTGGTACCATACGGTCATTTCCGCGATTTTTACGTTGGCAAAATGTTGCAATGCGCAA GGATAAAATACTGAAAGCATTTGAAGACAATCGTGTACTTGAGAAGTTGGCTGCCACAAGTGAAGAGCTACAGTATGATG TTGTGATGGAAGCAATGCAAAAGGCACCAAGCGGGTTTCCCCATAGGCACAAGCTGAATTTTTATGCGGAGAGAGAGAGA CATGTAAACATCAGGTCATAG
Protein sequence (LotjaGi1g1v0251100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQFAVVPPPTPSPAASTHPFMQNMVRFRHTCKTKWLVKVNKHLTDAQRSRIQRTPFHSLMEMPEKLRTNCILLSNLESR WEENRFGFKIQDNVVPFTPLDVCFSLGLRLVGLNVNYNGDEDAECHTKGLFKGEEITVKTIVKQLRRHKSDDKVDDFCRL YILLVFATFYFPQSSTSCLLRMLDNLNSLQEYSWGVAVYDTLVLSLSRCAKCLNKSKNKSVVRITGCAAILQIWALEHMF LRGRPICTGTIRSFPRFLRWQNVAMRKDKILKAFEDNRVLEKLAATSEELQYDVVMEAMQKAPSGFPHRHKLNFYAERER HVNIRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 155 | 155 | - | – | |
| PANTHER | 25 | 301 | 277 | 5.3E-46 | – | |
| PANTHER | 25 | 301 | 277 | 5.3E-46 | – | |
| Pfam | 67 | 275 | 209 | 4.6E-10 | ||
| Phobius | 156 | 172 | 17 | - | – | |
| Phobius | 173 | 191 | 19 | - | – | |
| Phobius | 192 | 209 | 18 | - | – | |
| Phobius | 210 | 220 | 11 | - | – | |
| Phobius | 221 | 241 | 21 | - | – | |
| Phobius | 242 | 326 | 85 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0251100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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