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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0243400 |
| Transcript ID | LotjaGi2g1v0243400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sirohydrochlorin ferrochelatase; TAIR: AT1G50170.1 sirohydrochlorin ferrochelatase B; Swiss-Prot: sp|Q84JH7|SIRB_ARATH Sirohydrochlorin ferrochelatase, chloroplastic; TrEMBL-Plants: tr|A0A0B2R6K7|A0A0B2R6K7_GLYSO Sirohydrochlorin ferrochelatase; Found in the gene: LotjaGi2g1v0243400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70663956..70666713) extracted from Lotus japonicus Gifu genome v1.2.
GAAGAAGAACAGAAACCTCGTCTATCTCTTGCAAGCAGCACTGCTGTTAACTCTCTTCTCTTCAACAATCATGCTGATGA AGTCTCTCTCGCTTCATTCCCATGCTTTCCCAAGGTACTTCCAATTTCTGGGTACCCTTGTTCTTCCTCATTGCACACTC CATCTCAGTTTCGTTTCCATAACTTTTTTGATTGGTGGTGTTCTCATTGATTTCACAGTTTTTCTAGCGATATCGGTGTA AACTCGAAATGGGTACCCTTCAAATCCTCTAATTTTCTCAGTTGTACCTCAAAGCCTCGAGTTTTACAGAGGTTTTTGTG TCTGAGCACTCAAAACGGTGGCATTGTGGGAAGCACTGGTGGGGTTGGTCGTGGAGATGCAGTGATTATTGTGGATCATG GGTCTCGTCGTCAAGAGTCCAATCTCATGCTTAGTAAGCTTAACTTAGCTGTTACTGTGTTTGACTTTGTTTATTTTGAA TTACCTACAAGAATTTTTTTCTCTTTTTTTCGGTTTGTTTTGTTTTGTTTTTAAATTGGAGTTTCCTGAAATTGGTTATG TAGTTGGGAATGCTTTTATGTGATGCCTGAAGTGTTGTTTTGTTTTGAATGCTAGATGAGTTTGTGGAGATGTTTAAACA CAAGACTGGATACGAGATTGTGGAGCCTGCTCATATGGTAATGTTTTGCAATCTGTTGAGTTTTTTCACATGTTAAGTAC ATAAAGGCAAGATTAAGATAGAATATGAAATGTGAACGATGGTAGATAGATACTTCACGGTGAAGTCAAAATCACAGTGG ACAGCCGCATAACTAAGGGAAGTTGATTCTGTCTACTGTGATTTTTCACTATGTATCCAAACGTGCATCGGTCATAGCTT GGTTTAAGGTTTCTTTTAATTGGCAATTTTCTGTCTCAGTTTATGGTAAAACTTACTTGCTTTTCTTTTTTCTTTTAATC CTGCAAGCATGCAACCTAACTTGGCATCATTTTAGGATTCTTAGCATTTCCTTTTGATTGTATGGCATGTGCAATAGAAC ATGGTTTTCCTTCATGAGGACATAGAGTTAGCCTTCTTACCCTTTCTTTTATGTTCCGATCTTGAAGCTAGATTTGGCTC ATTGAAACGACAGTAGCAATAAAGAATTTTCTTTGTGCATCTGGCCATGTCTTTGCTTTTGCATTTTATGACAATTGCAG CCAGAGCAAATTCTTGATGCTTCATAATGTTTATACATTTTCAGGAATTAGCAGAGCCATCAATTGGAGATGCTTTTGGA TCCTGTGTTCAGCAAGGTGCACACCGCATTATTATCAGTCCATTTTTCCTCTCTCCTGGAAGGCATTGGAGTCAGGTAGG TCTGCTTAGAACTCTGTCCTACCTTTCTATAAAATGTCAATGTGATTTTTTGACTTGATAAAGATAGAAAGTGGCAAAAA TTTCAAACTCCATTATGTTATGCAGGATATTCCTTCCTTGAGTGCAGAGGCAGCAAAGCAGCACCCAGGTGTGCCATATA TAGTAACTGCACCCCTTGGACTGCATGAACTACTTGTGGTATGAATTCTCTTACATTTGTTTTATTTTACACTAACTATC ATGGGTTGAATTAGTTAAAGCACTCGCTGAAAGTTGTTCTGTCTCCAAATTTAAGTTTGAGTGTATCAAAAAGGATTTTA TTTCAAATAACCTTTTGTGAACCAAATGGAGTTGGAGATGATTATCTCTTTACTATTCTTGATTATATCACAACAAGGCA TGAATTTAAATCCCTTTTGGTATTAGGTTATTGCTTCAAAATGAATTTAAGTTTTGCCAAGTGCTCTCTCGTCTTTAGGA ATCTGGTTAGTTTTCTAAGGAATCAAGCTTGGTGTACTTTCTTGAGGAATAACCCGAGCCTTATGGCAGATTTCAAATCC AAGGGTACAACACTAACATTATGTTGGAACACAAATAAAAGGGAATGAAATGTGATGAAACAGGGAGATTAATTCACGTC TCCTTGGTTCCATCTCTTAGTAAAACCAAGATGTGTCATTTTTGTTACTCCATTTCCTATTTTTTCACCCCTTGTCCGAT TATGTTTTATTTAATTTCAAAATGCACTAAACATAAAGTATAAGTTATAACCATATGCCTTGCTGTGCCCCATTCTTACA CATCTACCCAACACACTCTAAATGACCAAATAATGGATCTGTTATGCATCATATCTGCCATTTTGAACTTGAGCAATCTT GTGCTGCAGGATGTTGTGAATGATAGAATCGAGCATTGCTTAAAGCATGTTGCTGGAGATGCAGATGAGTGTTTAGTTTG TGCCGGAACTGGTAAATGCAGACTTCATTAATCTATGAAAGTATATTCTTTTGGGTGCTCTATACAAGGTAGATGAGGCT GAAAGCCAAAGGAGTATGTAAATAAGTTTCATATGTTTGGAAGCCATGACTTCAAGATGTAGATGGAATGTTGCAAATTT GCAAATTGCAATGGACATTTGTGTTCATAGTCGTCAATGGCCATTTTCAGAAGAAAGATTCAAGATGAACTGTATAATCT GAGTTGACACTTGAAGTTAGCCCTTGTATACTAAATTGTAGTCCTTATTCTTATTTCTTAAATTTCACATCAAAACACGG ATTAAATAAATATTAAATATTTGTCAACAGTTATTGGGTCGAACTCGAATGTGTCCCTTTTTTTAAAGGACCACTTTTGG AACCATAACCTTAATCATTTGGTTTATTTCAAATGCAG
CDS sequence (LotjaGi2g1v0243400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGATGAAGTCTCTCTCGCTTCATTCCCATGCTTTCCCAAGTTTTTCTAGCGATATCGGTGTAAACTCGAAATGGGT ACCCTTCAAATCCTCTAATTTTCTCAGTTGTACCTCAAAGCCTCGAGTTTTACAGAGGTTTTTGTGTCTGAGCACTCAAA ACGGTGGCATTGTGGGAAGCACTGGTGGGGTTGGTCGTGGAGATGCAGTGATTATTGTGGATCATGGGTCTCGTCGTCAA GAGTCCAATCTCATGCTTAATGAGTTTGTGGAGATGTTTAAACACAAGACTGGATACGAGATTGTGGAGCCTGCTCATAT GGAATTAGCAGAGCCATCAATTGGAGATGCTTTTGGATCCTGTGTTCAGCAAGGTGCACACCGCATTATTATCAGTCCAT TTTTCCTCTCTCCTGGAAGGCATTGGAGTCAGGATATTCCTTCCTTGAGTGCAGAGGCAGCAAAGCAGCACCCAGGTGTG CCATATATAGTAACTGCACCCCTTGGACTGCATGAACTACTTGTGGATGTTGTGAATGATAGAATCGAGCATTGCTTAAA GCATGTTGCTGGAGATGCAGATGAGTGTTTAGTTTGTGCCGGAACTGGTAAATGCAGACTTCATTAA
Protein sequence (LotjaGi2g1v0243400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLMKSLSLHSHAFPSFSSDIGVNSKWVPFKSSNFLSCTSKPRVLQRFLCLSTQNGGIVGSTGGVGRGDAVIIVDHGSRRQ ESNLMLNEFVEMFKHKTGYEIVEPAHMELAEPSIGDAFGSCVQQGAHRIIISPFFLSPGRHWSQDIPSLSAEAAKQHPGV PYIVTAPLGLHELLVDVVNDRIEHCLKHVAGDADECLVCAGTGKCRLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 5 | 13 | 9 | - | – | |
| PANTHER | 6 | 207 | 202 | 7.9E-98 | – | |
| PANTHER | 6 | 207 | 202 | 7.9E-98 | – | |
| Phobius | 14 | 17 | 4 | - | – | |
| Phobius | 18 | 208 | 191 | - | – | |
| Gene3D | 67 | 192 | 126 | 8.8E-35 | – | |
| SUPERFAMILY | 68 | 185 | 118 | 9.81E-33 | – | |
| CDD | 69 | 169 | 101 | 2.50753E-36 | – | |
| Pfam | 75 | 179 | 105 | 5.6E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cobalamin biosynthetic process | The chemical reactions and pathways resulting in the formation of cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom. | ||
| Molecular function | Sirohydrochlorin cobaltochelatase activity | Catalysis of the reaction: sirohydrochlorin + Co2+ = cobalt-sirohydrochlorin + 2 H+. |
Expression pattern of LotjaGi2g1v0243400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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