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LotjaGi4g1v0087000.1

Overview

Field Value
Gene ID LotjaGi4g1v0087000
Transcript ID LotjaGi4g1v0087000.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Transcription factor Pur-alpha 1; TAIR: AT2G32080.1 purin-rich alpha 1; Swiss-Prot: sp|Q9SKZ1|PUR_ARATH Transcription factor Pur-alpha 1; TrEMBL-Plants: tr|A0A151UB56|A0A151UB56_CAJCA Transcription factor Pur-alpha 1; Found in the gene: LotjaGi4g1v0087000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:11557027..11561082) extracted from Lotus japonicus Gifu genome v1.2.

GTGTAATAAAATCAGAAGTAACCTCATTATAGTTCATTTCACTTGTACGGGTACACTATTTAATGTCGACGCTGAAGTTA ACCTCCAGGTATAAGTCATTCCAAACTTGCACATACATACAGTAATTAAGTAATTACCACCACCAATACAATCCCCGCAG CTCAAAACAAATTGACTTTGTAGCGGTGAAAATAAAGATCACATCAAATGGATCTGCGAACAATAGCCTCGCCTTATGTG CTCACATCGGGAATTACGTCATCGTACTCCTTCTACTACTACTAGCTCCAGTCATTCATTCACACATTCACTCATTCATT CATTCCACTCCCGATTCCGATTCCGAACGAAACCCTTGGATTCGGCGATGCCGCTTTATTGTTAACAATCAGATCTAGAT AACTTCATTGAGTAGCGGCGCGGCGGAGATGGAGGGGAATTCCGGCGGTGGTGGTGGTGGCGGAAGCGGCGGTGGAGGCG GCGGCGGTGGAGGTTCTGATGTGGAGCTTCTGTGCAAGACGTTGCAGGTGGAGCACAAGCTGTTCTACTTCGATCTGAAG GAGAATCCTCGCGGTCGCTACCTCAAGATTTCGGAGAAGACTTCTGCTACGAGGTCCACCATCATCGTTCCGTTCTCCGG CATTTCCTGGTTTCTCGATCTCTTCAATTACTATGTTAACTCTGACGATCAAGACCTCTTCAGTAAGGAACTGCAGCTTG ACACCAAGGTAACTCAACCCACCCTCACTCTTCAATTCAGCTCCAAAGATTTCAATCTCACCACATTGATTGTAGTGTTT TTATCAAATTGATTTGTTAGAGATGCATAATTGTTGCCAAATTTAGAGTAAACAATCAATTTTCATTTGCAGGACTCAGG TAGTAAGTAGTATACAAAAGTATGAATTTGGTAACAATTTCGCTTAATTGCACCTCCGATTGCTCGTTCGCGATTCGCTT TAAGTGGGGACCAAAAGTGCAATTAAGCCTAACGATTTTGTATCTTTGACCGACTAATTTGATGAAAAGCATTCATTTGA TGGAGGCCAAACTGACAGATTTTTCCTTTTGTTTTTCAGGTTTTTTACTTCGACATTGGGGAGAATAGGAGGGGCCGCTT CTTAAAGGTACTTGTTACTTGAATTAGGTTTAATATGCTTTTTATGTTTGTTGGTTTGATGACTATTGTTCTTGACTTTA TTTTTTCCACATAGACATGTCAGAGTTTTGCAGTGGTATGTTTCTGTATTGCTGCAGAGGGAAGGTCAAAACATCTAGGA TTTGTAGAGTTTACAATTGGTGGTTTTAGGCTTTTAGCATGCATGTTTTTTCATGAGCTATAAGGAAATTTAGTTAATGG CATTGAAGGTGTTGTGATCAACCAAACCCTGGTATGAAAAGGTGGAAAATGAATAGCAGGTTTTACCATTTCAACTTGTT TATCAGTTGGAAAGAGCCTGATATATATAACAGGTTAGGGATATTAATAACCTTAGGATTTGAATGAAGATTTTCTTTTT CTTTTTTAAATCAAAACTAGGAATGTGAAACAAAAATGTAAATGTGTGGTAATTGATTGGGCTGCTGCTTGTTAGACATT CCTAAATAGTTGCTTGAATGCATAATACTACTTTAAGCTCTTGGAATTACACACTCTTCCTGGTCAATGGTTTATATGCA AGCATTTTGCTCTGCAGATTTTTTTGTAGAATTATTTTGGTAATGGTGGAAACAAAGTGCTTGCATATAAACATTGTGGA TTTGTATGGCTTGAACTCTGAAAGTAAAGGCCTGATTACAATGAGAAAAAGAGAACCTTATGGAAGTGAGCTTTATCTGT AAAAATCATGCCTTGGCAGATTTCTGATTTATCTTAGCATTGACTTCTGAAGCTTAGTTTTTAGATGTTTGACTGAATCT CTTAAGGTTGCAAAAAGCTGTATCTTGTTTTGCATCTATTTGGGCTTACCTAATTTTATTGTGGAATTTCTATCTTAGGA TGAATATTTTATGTATGTTTTTTTTGTGTGTCAAGATTATGATTCTAATTTATTTTTGAAGGTGTCGGAGGCTTCTGTAA GCAGAAACCGTAGCACTATAATTGTTCCTGCAGGAAGCTCCAGGGACGAAGGGTGGGCTGCATTCAGAAACATTTTGGCA GAGATTAATGAGGCATCAAGGCTTTTCATTATGCCCAATCAGGTTTCCTTAATTTGCATGTAGACATTTTTTGTAGTTCC AATTTATCTTCTAGGATCTGTTTAATGTCATCTAATTGTTTGTATTGCACAGCAGCAAAATTCTGAATCCTCAGAGCGTC TTGTCGGACTTTCGGATGATGTTGGTGCTGGCTTCATATCTGGTCATAGTACACAACCTGCAACCTCTTCTGAATTGAAT GTGGACAGGTCTGTTGATTTACCAGCTCAGGATGAAATTGGAAACTTGGGGGTCTCAAAAGTTATCAGGGCTGATCAAAA AAGATTCTTCTTTGATCTTGGGAGCAATAACAGGGGTCATTTCTTAAGAATATCTGAGGTTTGTTGCCATTGTCTTATTG TCCTTTACCCTTTATTATGTTTTAGTGTTCGAATATGACTTTCTGCTTTAAATTCTTGTTATTTCATTGCAGGTTGCAGG TTCTGATCGTTCCTCCATCATCCTTCCTCTGTCAGGGCTCAAGCAGTTTCATGAGATCGTTGGTCACTTTGTTGAAATCA CCAAGGACCGAATCGAGGGAATGGCAGTTGCAAATGTCCGCACAGTTGATCCCCCTCAAAGATGAGTGCTAACATATGGG GTTTTCTGTGACAACAAGTAGTCACTCTCGGCCAAGGTTTCGTTAGGGAATGGGTGTTATCGCTGTATCTGATTGTGCTA TTTTTATTTTTATTTTTCCTCAGCCTTCTCCTTCTCATGTCATCTTCAATTAATGCTTTTGAAATAATCCAAACACTGGT TGGTTGGTTAGCAGAATAAATGGAATATCTTGGCAAGGTCAATATGAATAGGAAATAACAAAAGAGAAATGAACCAGAGA CTTGTATTTGTTTGGATAGTTTGGCACCCGGTCTATATGTTGTAATAATGATTGTTTAATTATTTTGCTTTGCTGCACAG TTTTCACATGGATTTAAAGTTCTCATACAGGCTGAGGTATCAACCACCATGCGTACCATATTTTTAGGTTCGATGATTGG CTTCCTCCTTGCTTAAACTTAGCTTTCATAGTTTTACCATCATTTATCTGTTTTTTTTTGTCAATTCATTTATCTGTTTC TTGTGTATCTAAACTTGGGCCAAAACTATTTGGACCATCCTCATTTACTATCCACACCATCCTTTTGAGCAAAAATACAA TTATACCCCCAGACTTAAAAAAAACTGAATCAATCAAACAGGAAAAGAAAACTTCTCCCCACACCATCTCCCTCTCTCAC GGTTTCTCTCTTTCTCTCGGCCCTTTCATTCTCAACTTTCCCAAATGAAAAAAAAAAAAAAACCGTAGCCACCACCCTGA TCTTTGTTGGAGAAGGAAGGAAGGAGGAAGAAGGATCTTGAAGAAGTTGGAGAAGGAAGCAAGAAGAAGAAGCAAAGGAA CAAGAAAGAGGAAGAAGAGGAAGAAGGAGAAGTCAAACATCATCTTGACAAAATCGCTTGGTTTCCCGATCTGTTTCAAT ACACAATTTAAATTGCGGTAGCTTTATGCTTACGGCAATTTAAATTGGGGTAGTACTATGTTCCTCTGTTTTTCTGTTCC TTGATATCCTTTGGGTTTTTGAATCGCAAAATCGGGTTGTGTTCGTGAGCCTTGGACAGAACATAAGAGAAATCGATTTC TAAAACCTTCTGTTAAATTCAAAACCTGCCTGCTATGTTCCACTGTTGGATCCGCAATTAAAATTGCGATAGCTTTATCC TTTCCGTCATTTTAATTGCGGTAGTGCTATGTTTCTGATTGTTTGATCTGCAATTAAAATTGAGTAAACTACCGCAATTT AAATTGAGTAAACTACCACAATTAAAATTGAGTGAACTACCGCAATTTTAATTGAG 

CDS sequence (LotjaGi4g1v0087000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGGGAATTCCGGCGGTGGTGGTGGTGGCGGAAGCGGCGGTGGAGGCGGCGGCGGTGGAGGTTCTGATGTGGAGCT TCTGTGCAAGACGTTGCAGGTGGAGCACAAGCTGTTCTACTTCGATCTGAAGGAGAATCCTCGCGGTCGCTACCTCAAGA TTTCGGAGAAGACTTCTGCTACGAGGTCCACCATCATCGTTCCGTTCTCCGGCATTTCCTGGTTTCTCGATCTCTTCAAT TACTATGTTAACTCTGACGATCAAGACCTCTTCAGTAAGGAACTGCAGCTTGACACCAAGGTTTTTTACTTCGACATTGG GGAGAATAGGAGGGGCCGCTTCTTAAAGGTGTCGGAGGCTTCTGTAAGCAGAAACCGTAGCACTATAATTGTTCCTGCAG GAAGCTCCAGGGACGAAGGGTGGGCTGCATTCAGAAACATTTTGGCAGAGATTAATGAGGCATCAAGGCTTTTCATTATG CCCAATCAGCAGCAAAATTCTGAATCCTCAGAGCGTCTTGTCGGACTTTCGGATGATGTTGGTGCTGGCTTCATATCTGG TCATAGTACACAACCTGCAACCTCTTCTGAATTGAATGTGGACAGGTCTGTTGATTTACCAGCTCAGGATGAAATTGGAA ACTTGGGGGTCTCAAAAGTTATCAGGGCTGATCAAAAAAGATTCTTCTTTGATCTTGGGAGCAATAACAGGGGTCATTTC TTAAGAATATCTGAGGTTGCAGGTTCTGATCGTTCCTCCATCATCCTTCCTCTGTCAGGGCTCAAGCAGTTTCATGAGAT CGTTGGTCACTTTGTTGAAATCACCAAGGACCGAATCGAGGGAATGGCAGTTGCAAATGTCCGCACAGTTGATCCCCCTC AAAGATGA 

Protein sequence (LotjaGi4g1v0087000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGNSGGGGGGGSGGGGGGGGGSDVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFN YYVNSDDQDLFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLFIM PNQQQNSESSERLVGLSDDVGAGFISGHSTQPATSSELNVDRSVDLPAQDEIGNLGVSKVIRADQKRFFFDLGSNNRGHF LRISEVAGSDRSSIILPLSGLKQFHEIVGHFVEITKDRIEGMAVANVRTVDPPQR 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 10 282 273 1.1E-87
Gene3D 20 86 67 8.3E-19
SMART 26 87 62 3.9E-23
Pfam 30 84 55 5.2E-9
Gene3D 87 156 70 1.4E-21
SMART 89 156 68 6.5E-25
Pfam 90 151 62 1.2E-9
Gene3D 207 279 73 1.9E-20
Pfam 209 272 64 9.5E-13
SMART 215 276 62 5.2E-26

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function RNA polymerase II regulatory region sequence-specific DNA binding Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
Molecular function Purine-rich negative regulatory element binding Interacting selectively and non-covalently with a 30-bp purine-rich negative regulatory element; the best characterized such element is found in the first intronic region of the rat cardiac alpha-myosin heavy chain gene, and contains two palindromic high-affinity Ets-binding sites (CTTCCCTGGAAG). The presence of this element restricts expression of the gene containing it to cardiac myocytes.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0087000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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