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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0120200 |
| Transcript ID | LotjaGi4g1v0120200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatidic acid phosphatase family protein, putative; TAIR: AT3G50920.1 Phosphatidic acid phosphatase (PAP2) family protein; Swiss-Prot: sp|F4J220|LPPE1_ARATH Lipid phosphate phosphatase epsilon 1, chloroplastic; TrEMBL-Plants: tr|I3S350|I3S350_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0120200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:17350641..17355404) extracted from Lotus japonicus Gifu genome v1.2.
ACTGATCGAAGTTAATCTATTTGGCTTTAATGTGATCTGTTCTGTTGTAGTTAAGAGAGAGTTGTCTCTTAAGCTTAGAT TACAGAGAGTTTTATAATTCCCAGCATTATAGCAAACCATACTTTAATAAGACACGGATTAAGCTGAGGGTGGTGAAACT AGAGGTGGGATGATGGCAATAACAATTACCTATTTATAATTAGGATGAGTACGTGGTACTAACTATAACAACAAAATAGA CACCTGGATTTGAAAAAAAAAAACCTAGGTGTAAAAAATGATTAGTCTACATCATTCCCATAAAATACTCATAAAAAAAT CCTACACCAGATTAACCAAAGGAAAAGTCACCCACGCCAGCTACCTTTATATTTAAGTATTTTTCTCTCAAATCGGAATC TGTAGAACTTTTCGCCCCCTGAAAAGCAGGATTAGTGAGAAGATACTAATTTTGTTTTTTTCCAACCTTGTCATAAGCCT GTAGCCAGCCAACCAGAAAGTGTCTCTTTCAGAGTGATCGATTATGCAGCATAGACATAGATTCATGAAAAATTATTCGT TTGCTGGTAGATTATCTAACTCAAGAACAGTCTAGTAATTTCCTCACAAACATCATTAATTGACGTGACAGTGCCAACTG AATGGGTCTTGCCAAGTAGGTACAGCGGCCGGAACCACCTCTCCGACAAGGATCAATCCCGACTATTTCCCTTATTCTCT GTGAGCCTATTTCAAAAGCAACAAAAACCAAAACTAGCTTAAACTTCAGACTGAAAATAATGCTTAACTTATTATTTAAT ATATATATTGTTTCAAAAACAGATAAGCCAAATGAAAAGTCAATGATGCCATTTACCTTTATTTTTTAGTATTTTTCTCT CAAATCAGACACTTTCGAACAAACTTTGCGGCCCCAATGAAGAGCATTGCTAAGTATCCATCCTTCTCAGAAGCCTATAG CTAGCTAGTCAGAGTGATTATGCTGTAGTTATCCTTCCATATGACGGCAAATACAGCTGCCATTTTCTACAATCCATCTA ACAATTTTCTCGGGACAAATCTGCAGCATAAACATAGATTGTTGAAAAATTCTTCTTCATTTGCTCGTAGATTTTCTAAC TCAAGAACACTCTTTCTTGGCGGGTTTGTTGGTGACAAACTCTGTGCAGCTAATGCAATGGATGATGGATTCAAAGGAGC TTGTGCTCACAGAGATGAAAAGAGTGATGGACAAGTTCAAGTGGTTGAACAAGAAGCTTTCATTGATGGGTCATCCGAGT TTCATCCTAAGTTTTTGTTCCATGAGCTGGAGTCAACTCTCAATCAAATGGTTGGTATTCCTTAACCTTTCCAATCTAAT TTTGTCATTGCTGGTTGGTTGTGCCTTGAAAAATCTTCTACAATTGATTTTAAGGTACAAATCAGTTCATATGAGTAGCT TCTGGATATTGTATTGGAATTAATTATGAAGAAAAAATAAGCAGATCCAAATATGTTATTAAATGAATTAACTCCAATGC AGTCAGTTTTGATTTTGGAAATAGCCTTTCTTATGAGTTTGTATCCTGTATCCACTCGAGTCATTGAATGTATGCTGACT GTCATTCCATTGTGAGCACAGTTAACAAAAATGGAAACAGAAAAATGACACATTCTGAGACACTTTTTATCCAGAAAGTG AGAAAACAGAAAAATAACACATTCATACGCCATTTTTGTTCACAAAAAATGTACAGCAATTTGTTATTTTTTCGTTTTTA TACTTTCCAACAGATATCCAAACAAGCTAGCTCTGTTATTTAGATATTCCTTAAGACAATGTTTAGGGTTTGATAAGACG GCCTTATTCATAATCGTCCTATTTGCTTCCAAGTGCTGTCATATAGTGAAGTTTTTTTTATGATAAGATGGCCTACATAT AAGATGTTTTAACTAGTTTAGTTGTCATTTTAGGAACTGATGATGTGCTTTTGTTTACAGAGCAAGTGGTTAGTAACTGC CATATTTGGTGTTTTCATTCTTTGGAGGCATGATGCAGAAGCCTTATGGTTTGCAGCGGGGTCTTTTTTAAATGCAATGC TTTCTGCTTCGCTCAAACAAATGCTAAATCAGAAACGGCCTTCTACCCTGAAATCTGACCCTGGGATGCCCTCTTCCCAT GCTCAATCCATCTTCTTTATTGTCCTGTTTATTATTTTGTCAGGTAATTTCTCCCACCTCTTATTTCTATTCAGCTTAAT CGCATTTTGGTTAACATAGGTTCGTCAATGCATTATGTTTTTGTTTCCATAGAAACTACTCTCCCCACTTCATCCAAGTG CAAAAGCATTGGATTTCTTTCTCATTTTTAATATGACATATTAGAATTACATGACTTAACTACAGAAGTTTATGTTTCTT TCGTCATGTTGTGGGTGTTGAATGGCTAGGGATGAATGAGTTCACCATTACCAGCAGTGGCCTGGCCTTAGCATTTGCTT CCTATTTTGTGAGTAAATAGTATTTCCAATTGAGTTAATTGGTACATGTTTTATGTTTGATCAAAGGCAATGGTTATCTT GAATTTCCATCTCTTGCATTAGGCCATGGTTACTTTCTGCTATACTGTCATGGCTTGATTGTATAAATTAGTTTGCCATG GGAACCTTACATTAGGCAATGGTCACTTTCTGCTTTGCTGTCATGGCTTGATTTTATACACTAGTTTGTCATGGCTACCT CTTACATTAGGCAATGGTTACTTTGGCTTGTTTTTATACACTAGTTTGTCATGGTTACCTCTTGCATCGGTCAATGGTCA CTTTCTGCTATACTGTCATGGCTTAATTTTATACACTCTCATTCTTGATTGCTACTTCTATGTTTCCAGTCATACCTGCG GGTGTCGCAAAAACTTCACACGGTGAGCCAGGTGATTGTTGGAGCTGTTACAGGGTCCATTTGCGCTATCTTGTGGCAAT GGCTATGGAATTCTTTTATGCTGGATGTTTTTGTATCCTCTTCGTGGGTCAGAATCATCGTTGTTTTGGGGTCTGTAGGA TTTTGCTTAGGTTTTCTTTTACATGTGATTCAACATTGGCTTAAACGCGAATAAAAATCCTGTTACACATTGTACCATGT TGTGAGGGCTAATGCATTTTATTTTGGTTCATCCAAAATTGAATTCATACAACCAATGTGATATCAGTGGATATTAATTC TTCTATTAATAAACACATTTTTTTATAGGATCTTGCAATACACAAGTCTTCCTGACAATCTTATCACTACATCAACACTT ACTTTGTTTAGAATAATGTTCTAAAATTTCTTCAAGATTAAGTACTAAAAAAGGTTACTTTTATTACCTTACCAAGAAAC AAAGTAAAATAGACTTCAAAATAATTTAACCAAGAACAAACATAATTTTCTTACACTATTGAGATTGGGCTCATGCGTTC ACATTTCATGGTAAAACAGAGCAATTAGGCCAAAAATGTGGGATTGGTTTGTTGATTGATATTTCACTTCCATTCCTGCT TGCTTTGCGACCACCGTCTTATGTCAAAACCAGACAACAACATAACCTGAAGAACTTCAGAGAAGGACCCTCTGCAGCAG CATGCACATTGTGTAGTATCGTGTCTTGCAGGATCAAGCAGACATATAATCCTGTTGTGCTGCACAAGAATCTAAATTCA GAAAGCTCAGTGAGGCTAATCCCTCGCAAAGTTGCTGTTGAATCATGTATTCTGTTTTTTTCATTTGATTGGCTCCTTCC CAACCTATCTTTCTATAGGTTGGCTCAGTCCTAGATACACTCTAGCCTCCTGGATAGCTTGTCTTTCAATAGAGTTTCTC CGTTTCATCTTGTCTTACCACAACCAGACATACGGTGCATCTATGTAAACAGTTTAATTAAGCGCTTATGGCAATAGGTG TTTATCGCATAAGCGCTTATTTGTGAGCTAATTAGAGAAACTTAGTGAAATAAAATTAAAATAGGTTATAAATAAGCATA AGCTTTTATTCATAAACTAATATGAACAGCTTCATAAGCTTAAAACAGCATATAGGTAGGCCATAAACTATTTACACAAG TTCTACCAAACACTTGCATAAACGCTTATGCTAATAGATAAGCTCAAACAAGCTCTTCCACGGGGCCATAGTCCAGATTT GGTATTTTCTATTTTCATTATTATCTGTACTTATCAGAAAAAAAAATCCTATTTCAGATTTTTTTTATATACATCCCTAG TAGTCTAGTACTATGACTAGTATTATGTATATACATACAACAAATGACATTGATATATTCTACCTTGCCTAAATCCCTAC ACTTTCGACATATTTAGTCAATTCGAATTCCTATTTTCCAAATAAAGTGACAAACCATAACAATTACGTTTTCTTTCATT CATGTTTCACATTCGTTTGAACTGTTCAACCAAAATTAATGGTAATCTAAACATGACATGGAACATTGTTTCCATGTCTT AAACTTTCTATTTAACTTAGTTTTATTTCACATTTACCAAATAGGGGATCATTGGATAAGCCTACAAGGAGCGGAACAGG GTTACTGTCTGCCAAAATCATATATTCACTTTAAGTTTCTATGGTACCTGTAGCAAGGGATCGAAACTTACATATTATGA TTGATGTCCAACGAGTTATTCGTTACTTCTTCACATCATAAAACACGTATCTGACCCCCATAACCATAGTCCTTAAGGAG GCCTTCGTCTTGTCGCCAATTTTCTCTAACCTTCACTTCAATCT
CDS sequence (LotjaGi4g1v0120200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGCAAATACAGCTGCCATTTTCTACAATCCATCTAACAATTTTCTCGGGACAAATCTGCAGCATAAACATAGATT GTTGAAAAATTCTTCTTCATTTGCTCGTAGATTTTCTAACTCAAGAACACTCTTTCTTGGCGGGTTTGTTGGTGACAAAC TCTGTGCAGCTAATGCAATGGATGATGGATTCAAAGGAGCTTGTGCTCACAGAGATGAAAAGAGTGATGGACAAGTTCAA GTGGTTGAACAAGAAGCTTTCATTGATGGGTCATCCGAGTTTCATCCTAAGTTTTTGTTCCATGAGCTGGAGTCAACTCT CAATCAAATGAGCAAGTGGTTAGTAACTGCCATATTTGGTGTTTTCATTCTTTGGAGGCATGATGCAGAAGCCTTATGGT TTGCAGCGGGGTCTTTTTTAAATGCAATGCTTTCTGCTTCGCTCAAACAAATGCTAAATCAGAAACGGCCTTCTACCCTG AAATCTGACCCTGGGATGCCCTCTTCCCATGCTCAATCCATCTTCTTTATTGTCCTGTTTATTATTTTGTCAGTCATACC TGCGGGTGTCGCAAAAACTTCACACGGTGAGCCAGGTGATTGTTGGAGCTGTTACAGGGTCCATTTGCGCTATCTTGTGG CAATGGCTATGGAATTCTTTTATGCTGGATGTTTTTGTATCCTCTTCGTGGGTCAGAATCATCGTTGTTTTGGGGTCTGT AGGATTTTGCTTAGGTTTTCTTTTACATGTGATTCAACATTGGCTTAA
Protein sequence (LotjaGi4g1v0120200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTANTAAIFYNPSNNFLGTNLQHKHRLLKNSSSFARRFSNSRTLFLGGFVGDKLCAANAMDDGFKGACAHRDEKSDGQVQ VVEQEAFIDGSSEFHPKFLFHELESTLNQMSKWLVTAIFGVFILWRHDAEALWFAAGSFLNAMLSASLKQMLNQKRPSTL KSDPGMPSSHAQSIFFIVLFIILSVIPAGVAKTSHGEPGDCWSCYRVHLRYLVAMAMEFFYAGCFCILFVGQNHRCFGVC RILLRFSFTCDSTLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 106 | 106 | - | – | |
| PANTHER | 65 | 192 | 128 | 5.1E-47 | – | |
| PANTHER | 65 | 192 | 128 | 5.1E-47 | – | |
| Phobius | 107 | 125 | 19 | - | – | |
| SUPERFAMILY | 108 | 183 | 76 | 5.89E-6 | ||
| Phobius | 126 | 130 | 5 | - | – | |
| Phobius | 131 | 152 | 22 | - | – | |
| TMHMM | 131 | 148 | 18 | - | – | |
| Phobius | 153 | 172 | 20 | - | – | |
| TMHMM | 169 | 191 | 23 | - | – | |
| Phobius | 173 | 191 | 19 | - | – | |
| Phobius | 192 | 210 | 19 | - | – | |
| Phobius | 211 | 231 | 21 | - | – | |
| TMHMM | 211 | 231 | 21 | - | – | |
| Phobius | 232 | 255 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0120200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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