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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0017600 |
| Transcript ID | LotjaGi5g1v0017600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription repressor; TAIR: AT5G19650.1 ovate family protein 8; Swiss-Prot: sp|Q3E9B4|OFP8_ARATH Transcription repressor OFP8; TrEMBL-Plants: tr|A0A0D2QJP7|A0A0D2QJP7_GOSRA Uncharacterized protein; Found in the gene: LotjaGi5g1v0017600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3471778..3474323) extracted from Lotus japonicus Gifu genome v1.2.
AACTTTTAACCCATTCAAAAGCTAGCTGAGAAAAACAAAATTTGCAACTCAAAGGCTCCATAAACGTATTCAAAATCTCA AAAGTTATTTACAATGATTAAACTAAGGTTAAGTGCCTCCATTACTTTTCATACATAACTCTATAAATTAAATACATGGT TGTTCATTATGTAATTTAATCATAACTCATTTAATTTGTCAATTATTGCTCTTTTTAGACTTTGAATTTCTCTCTCTAAT CTTAAATTAACTTAACATCCTCGCCCATATTCCGCCATGGACGTTTAACATGCCACCGTGCTCTCAGTCTTGCACCTGCC TGATATGAGTGAAATTGAAGTGTGAACAAATTAATTTCTCACTCAGGTATGAACACCCATGCTCACTTGGATTTCTGGCG TCATTCTATCAGCTGGTGTCACCATTAGGTCCTACTTCTTCCCTACTATTTGGCCGGCCTTCAATTTTTCTAACATTCTT TACCTTATAAATATTATTAACCCTTACACCATTCTCTTCAAGGTCTCAAAAACCTTGAAAGCTTAGCTAGTTTTAATTAA TTTGCTACACCATATTTTACTACCAACACCATGGCTAAAAGCTTTAAGCTCAAATTCAAGATCCCTTCATTTCAATTGTG TTGTTCAAAACACCATCATCCCACAGTTCCTTCCATACATCGTCTTTCTCCTATGAATCCCAAAGCATGTGATGTTGGGT ACCCAAAAAACCCACCTGCTCCACCACCTTCAACACCTGAATACCAGTGCATAGTTTCACCAAAAATCACTGCTATAGCA ATGTTTTCCAATTCTCCTGACATCGTTCACTGTGAAATTGAATCCACCTTTTGCAAAATGGGCCTCAAAGCCAGAGTCCA AAAAACAAAAACAGCCATGGCAAGTGTTTTATCAAGGAGTGCAACAAGAAGTGATTCTTTTGTTCATAAACTCAACAATT ATATTGAAGAAGAAGATAGTGAGTCTCTACTTTCATTCTCCGCGAGTTTCAGTGACGAGTTTTACCATGAACCGAGTGAT GAAATGGCCCATTCTCCTTACAAGAGCCAGAGGAAAACAGAGGAAAAGGTTGTCAGCAAAACAGAGAAACAGGGGAAGAA TAGCAAAAGCAACATAGGGAAGGTTCAAAAACTGAATTTTCTTCATGATTCAGAGATGGAAGAGGAGAAAGATGAGAAGA AGAAAGGGATGGTGAGAAGGGCATCATCAATGGCAGAGGGGTGCGACGCGGTGGCGGAGGGAATGGTGATGAATGAGAGC TTTGCAGTGGTGAAAAGGTCGAATGATCCGTACGAGGATTTCAGGAGGTCAATGGTGGAGATGATAATGGAGATGGAGAT GACACAAGCTGAGGATTTGGAGAGGCTTTTGCAGTGTTTTCTGGCTCTGAACTCACGGTGTTATCATGGAGTAATAGTGA AAGTTTTCATGGAGATTTGGCAACAACTGTTTTCTGAAACATCATGCTTCCAACAAAAAATCTTAGAATAAGAAGACAAG TTAATAATCGTGTTCTCCACACATGCATGGTTAGTAAAAAGAGAATTTCCCCTTTTGTTTAAGTTTTTCCTCTTAAGGAG ATTTGTAAATTTGGAATTCAAAGACTGAAGTTAATGTTTTGTTTGAATTTGTACTTGAGCTATGGGGTGATCGAAGGGAG GGAGGGAGGACATGGGGTGCCATGGTCCCCAAGCCTTTCAATTTTATTTTTTATATGTTACACTCATGTAAGTAGTAGAA CTTATTGTAAGTATGTCATATTTTTTTTTGTTCTTGCCCTCCCTTTTATCTTAGCTCTCATAGTCTCAAATTTCTGTCTC GTCACTTTTGCAAGTAGCTTTGATTGAGAGGAATTGTTAAAAACATTTTGATACATTTGCACTAATTTTCTCTTCCATTT CATGTATATCTCATTTTACCATTATGTTCACGTAGTGAAAATAATGTAGGGGCCAACTCTTGTACCCTCTGAAATTAGGG TTCTTAACCTAGATGTCTCTCTTAGTATTCAAGCGAAGATGCTTATTACAATGAAGTCTTTCCCTTTAACTCTAACCCTA ATTCACGACCTCCCTCCTACACGTGGCTAGTATAAGTTACGTTTTACATATGAAAAGTGATGATCCTAGCTCTACACATG TCAGGTCTGGGACTCAATATTGAGAGCGGACAATTCATATGTGAATTCCTGGGAGGACTTTTAAGTCTCTAAGTCCTCTA GTCGCGCAACCTTCTCATGGTCGTCCGAAGGTTATAATTGCCACTTGTCGCCCAATACTTTTCAGCATATCTTTCCTCTA CTAGGTCCTAAATAGAGGCAATTCATAGATTGGGTCACCTTAATCGGCGAACCAACTTGGGCGACCCTAGTAGGCTGGGT AACCTCTCTCTAGTTCACATTATTTTCTTTTTCTATCACACAACTCATCATATTTCTCATTCTTCTCTTCACATCTCTCT AGTGTGAGTGGAGTTCTTTTGGTCTAGCAAATGTATCATCCACAAAAGTCAATCATGTTCGAGTCG
CDS sequence (LotjaGi5g1v0017600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAAAAGCTTTAAGCTCAAATTCAAGATCCCTTCATTTCAATTGTGTTGTTCAAAACACCATCATCCCACAGTTCC TTCCATACATCGTCTTTCTCCTATGAATCCCAAAGCATGTGATGTTGGGTACCCAAAAAACCCACCTGCTCCACCACCTT CAACACCTGAATACCAGTGCATAGTTTCACCAAAAATCACTGCTATAGCAATGTTTTCCAATTCTCCTGACATCGTTCAC TGTGAAATTGAATCCACCTTTTGCAAAATGGGCCTCAAAGCCAGAGTCCAAAAAACAAAAACAGCCATGGCAAGTGTTTT ATCAAGGAGTGCAACAAGAAGTGATTCTTTTGTTCATAAACTCAACAATTATATTGAAGAAGAAGATAGTGAGTCTCTAC TTTCATTCTCCGCGAGTTTCAGTGACGAGTTTTACCATGAACCGAGTGATGAAATGGCCCATTCTCCTTACAAGAGCCAG AGGAAAACAGAGGAAAAGGTTGTCAGCAAAACAGAGAAACAGGGGAAGAATAGCAAAAGCAACATAGGGAAGGTTCAAAA ACTGAATTTTCTTCATGATTCAGAGATGGAAGAGGAGAAAGATGAGAAGAAGAAAGGGATGGTGAGAAGGGCATCATCAA TGGCAGAGGGGTGCGACGCGGTGGCGGAGGGAATGGTGATGAATGAGAGCTTTGCAGTGGTGAAAAGGTCGAATGATCCG TACGAGGATTTCAGGAGGTCAATGGTGGAGATGATAATGGAGATGGAGATGACACAAGCTGAGGATTTGGAGAGGCTTTT GCAGTGTTTTCTGGCTCTGAACTCACGGTGTTATCATGGAGTAATAGTGAAAGTTTTCATGGAGATTTGGCAACAACTGT TTTCTGAAACATCATGCTTCCAACAAAAAATCTTAGAATAA
Protein sequence (LotjaGi5g1v0017600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKSFKLKFKIPSFQLCCSKHHHPTVPSIHRLSPMNPKACDVGYPKNPPAPPPSTPEYQCIVSPKITAIAMFSNSPDIVH CEIESTFCKMGLKARVQKTKTAMASVLSRSATRSDSFVHKLNNYIEEEDSESLLSFSASFSDEFYHEPSDEMAHSPYKSQ RKTEEKVVSKTEKQGKNSKSNIGKVQKLNFLHDSEMEEEKDEKKKGMVRRASSMAEGCDAVAEGMVMNESFAVVKRSNDP YEDFRRSMVEMIMEMEMTQAEDLERLLQCFLALNSRCYHGVIVKVFMEIWQQLFSETSCFQQKILE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 295 | 295 | 4.5E-59 | – | |
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 295 | 295 | 4.5E-59 | ||
| MobiDBLite | 148 | 179 | 32 | - | – | |
| MobiDBLite | 148 | 173 | 26 | - | – | |
| TIGRFAM | 231 | 294 | 64 | 2.7E-23 | ||
| ProSiteProfiles | 233 | 292 | 60 | 18.026 | ||
| Pfam | 237 | 294 | 58 | 7.3E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Negative regulation of transcription, DNA-templated | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0017600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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