Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0240300 |
| Transcript ID | LotjaGi5g1v0240300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Autophagy-related protein; TAIR: AT3G15580.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q9LRP7|ATG8I_ARATH Autophagy-related protein 8i; TrEMBL-Plants: tr|I3RZ94|I3RZ94_LOTJA Autophagy-related protein; Found in the gene: LotjaGi5g1v0240300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54856097..54858994) extracted from Lotus japonicus Gifu genome v1.2.
TTTTATGGTCATTTGGAAATCCTATTATTGTGAATAAAAAAAACTCATTAGTCAACACTGTAGTGCGTTGACCGTGAGGC GATGGACTAATCTCATTGCTACCAAATGTAAGAATACCTTGATTTTGATTAAGACATGAAAAACAGTCTCTTCAAAACTC ATTAATATTCTTTTATCTGCATACAAATGAGGATGCAGCAGACCTGTTGCAATGAAGAGCACCAAGACCCACAAAAAGTT AAATGGGCAAACCCCTCACAATTACATAGCCCATCAACTTCTCCAGTTTTCAGCCCAAAAACAATCAAAATTACAAGAAA CAAAAAATATGCGGTGAGCGTGGATCGAACACGCGACCTTCAGATCTTCAGTCTGACGCTCTCCCAACTGAGCTATCCCC GCACGACACGTTCACTTCATATCCCACAAACAATATAATCTTAAATCAGTTCACTGTGACGTGTTGAATCAGAACTTCGA AAACAGAAGATTAGTTTACAGTACACGAACTCACTCGTGTTTTCTCGATTCTTCTTCAACACAACAACGACGACAACATG GGAGGAAGTTCGAGTTTCAAGGATGAATTCACCTTCGGTGCGCTCAATTCTTCTTCACCCTTTCTCCCAATTTCCCTTAC CTAATTCACTCATCACTGTCTCTCACTCTTCGATTTCGCGCGCGCAGACCAAAGACTCGAAGAATCGCGGGAGATTATCG CCAAATACCCCGATCGTGTCCCTGTCATTGTGGAAAGGTATTTGAAGTCCGATCTGCCTGAGCTGGGAAAGAGAAAGTAA GATCACCTTCCACTGCATAACTGGAAGCATGTTAAACCCTAACACTAACAGTGTAACCCTATATGATTTAAAGTTTGATT GATAAATGGATATATCATTAACATGCAAGTAATTGCATCATAAATTTGTTTGGAAACCATTATAGAGTTGATTACCAAGT CAGAATCAATTTTATTTGAAGCTTTCAGGTTTTAGAATTGATTATGATGAAAGAGAAATTGATGCTAATAATAGGCTGAC ATTGTGATATCTATTGCCATGATTTAGATCAAATAACTCATTTTATCAATTCTCTAATACATGTTCCTAATATTTTGTGT TTGTCATAGATACCTTGTTCCCCGAGACTTGTCTGTTGGTCATTTCATTCATATTTTGAGTTCCAGACTCAGTCTGCCCC CTGGAAAAGCTCTCTTTGTGTTTGTCAAGAACACCTTGCCTCAAACTGGTAAGCTTGTGCTATAACCGAATAAGTTAATG CTTTCTTTCTCTCTTTCTTTATTTGTTTCTTCTTTCGCGATTATTTTCTTCATTTTGTTGTCGTAAATGGTGGCGTGCTT CAACATGTTGTGTTTGTGATTATCTGCAGCTAGTATGATGGACTCTGTTTATAGATCATTCAGGGATGAGGATGGATTTC TTTACATGTACTATAGCACCGAGAAGACCTTTGGCTCTGTACATAATATAAACTGTTAAAAATCTGTACACTATTGTATA TATGCAACACTGACATTGTGAACTACTTCTTGTATCACAAACCTGGTAAAAATATGTTGTATGCATGAAAGTGGGGAAAA AGGTAAAATTATTATATCCTTGTTTTGATTTGGATCCTCTTATGTCACATGATATAATTATGTTAAATTTGTTGTCTATT TCTCTCTTCATAAGGGTATGAGAAATTTTAATTTCTTCATTAGCCCACAATATTGGTTGATACTTATTCTCTCGACTATT GCTCGCCTCTTCTTTTCAGTTATACAACTAGGCAAACTCAAAACATACATAAGGCTTGTAACATACATAGGCTAGTAACA TAAACCTAAAATGATGAGTGCAAAATTAATTTCTTTGGATTTAATGTAAAAGTAATGTATTTTGTGCTTAATTTGATGCA TTCCTTAAAATTTAGGAATTCCCATGAATTCTGGAGCTAAATTTGAAAGGTTTCTCTTAGAAGCATTTACAGCTTAGTGG ACCTATTTGGCAGGTTGGGGGGGGGGGTGAGATAGGGCAGGGAAATCCCTTTTTCCACCTCTACACTTTGACGCTTAAGT CAACGAGTATTTTAACAAAGTTAAATTATGATAATAAAAAACATACATGGGGGTGTCACGCCTTTTCATATTAACGATGG TAGTGTGCGGGTGAGTCATGAGTCATAATAGGTGATAAGATCTGAGTTCTATGTATGTCCCTAGCAGTAGACCCTGTTTC TCATTGTAAAAAATCCTAGTTGCGACTTCTCCACACGGTCTCCTATAGCTACCCATAAGGAAGGCCTCCCCTGAATGAAG GTTTTCTACGCACACTTGGTGAGTTATTCCCCCTTATTGGTTAGAGAATTCCTTCCCTGTTCGCACATATTGCATTCGTG GGGGACCAAAAGTGCTATTAAGTCTTCCTCTTATATGTTTTTTACCCTTTGCTCCTCTTGTTCTTTCCCTTTGCTTTCAC TCTCTTTTGTCTAAGATAACAATGATACTGAGCAACAGATTATGGTGTAATTCTGCAGTGTTTAACCATTCTTGAATACA ACTGGAGTACTGGACACATTTTCTATCAAATATCAATTTCATAAATCTATATACTATAGAAAAGAAGAACTCTGTGAGAC CCACTTAGATGAGTTGGCACTCCCAGGTTCACTCTTATCCACCCTCCCTCATTAGCTGACAAGTGTCAAGCTCTAAATGA TTCTGACAAATTTATGGTGAGATAATTTCTCCTTAATTTTGGTTTTGTGGCCCATCATTAACAATCTATTGAATAATCAT AAAAAATCTCATTAATTGTTGATTAATTTTTTTTAACTGTCCATTTATCCTGAATCAAAAGTCATCACCCATCATTAACT ACTTATGGAATAGTCATT
CDS sequence (LotjaGi5g1v0240300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGAAGTTCGAGTTTCAAGGATGAATTCACCTTCGACCAAAGACTCGAAGAATCGCGGGAGATTATCGCCAAATA CCCCGATCGTGTCCCTGTCATTGTGGAAAGGTATTTGAAGTCCGATCTGCCTGAGCTGGGAAAGAGAAAATACCTTGTTC CCCGAGACTTGTCTGTTGGTCATTTCATTCATATTTTGAGTTCCAGACTCAGTCTGCCCCCTGGAAAAGCTCTCTTTGTG TTTGTCAAGAACACCTTGCCTCAAACTGCTAGTATGATGGACTCTGTTTATAGATCATTCAGGGATGAGGATGGATTTCT TTACATGTACTATAGCACCGAGAAGACCTTTGGCTCTGTACATAATATAAACTGTTAA
Protein sequence (LotjaGi5g1v0240300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGSSSFKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVGHFIHILSSRLSLPPGKALFV FVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFGSVHNINC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 118 | 118 | 4.2E-64 | – | |
| Gene3D | 1 | 118 | 118 | 9.7E-46 | – | |
| PANTHER | 1 | 118 | 118 | 4.2E-64 | ||
| SUPERFAMILY | 5 | 118 | 114 | 3.88E-40 | ||
| CDD | 7 | 118 | 112 | 5.05688E-48 | – | |
| Pfam | 15 | 118 | 104 | 2.3E-43 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0240300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…