Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0013000 |
| Transcript ID | LotjaGi6g1v0013000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GDT1-like protein; TAIR: AT4G13590.1 Uncharacterized protein family (UPF0016); Swiss-Prot: sp|Q9T0H9|PA71H_ARATH Protein PAM71-homolog, chloroplastic; TrEMBL-Plants: tr|A0A151QW73|A0A151QW73_CAJCA UPF0016 membrane protein sll0615 family; Found in the gene: LotjaGi6g1v0013000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:2415663..2424143) extracted from Lotus japonicus Gifu genome v1.2.
CCTGTACATATAAGACAAATCCAAAGGAATCTTCCAGTTGGCTTGTGGGTCCATCATCTAAGGGAGGGCAATGAAGCTCG TCGTGTCGCCTTTCCCGCCATGGCTATCTTCAATGGTTTATTGTTCATTTTGGGCGGGACATAATCTTCTTTATGTCCCG CCCAGTCCAGGATGACAGGGACAATCTGGTATTTTCCCCGCAGAAATTTGGTGGTGTATGAGTACACCACCTAATTGACT GGTGCACATTAAACGCACCCACTTTCTAGTTTCTACTTCTTCTTTCTTTTCCCTTTATAATTTTTTATTTTCTTTCTCTC ACTTTTCTTTCTCAACCAAACAAAGACTAGATGTCCATTTATCTTTCTCTCTGCATACGTGGCAGCCTTCAAGAACTATC TCTCTCTGTAGCATCTATCAACCTTAGCCAAACCGAGAAACAACCTCGTTTGATTCAAAGTTTCATACTTTCTGAAAATT CTGAGTTTTGTTGTCTAGGATTCGAAATACCCACAAGTTGAAAAATGAAATTGTAGAAGCAGTTTCGTGAAACATGAAAG GTTTTGGTCTTCACTCACCCTTGCTTTCTAAGGGAAAGCCTCCTCCTTTGTTGGCAGTGGTGGACGCATTACCATTCTGT GCTTGTTCCTCTAAAACCACTAGCTTAACCACATGTGAGTTCTACTCAATATTTGTGATGTTTTCTCACACCCCATTTAT CTTATTTTGTTTCATCTTGGTTTGACTTGGATTGAAGTTTCAAGCTTGATGTTTTGGTCTAGTTCTTTAGTTTAAACTTT ACATTGATTATTTCTTTATTGTTCTGTTCTTTTTAACACTAGTTGGATATCTGATTCAGTTGTGTCAAAACCAAAACTTT CACACTTTGGTGGTGTTGTTGATAAGAAAAAAATGTTGTTTGAGGTTGTAATGATCAATGATTTTAGATTTTGTGACATG GTTGTTGATTTTGTATTTTTGTTTGAGGCAGTGTTTCCTTGTTGTCTGGATTTTAATGTTATTCTTTTTGGTCGGCATTA TTGGTGAGATAATGACTCTAAGTTGTTGTGCTAATCTCATGTTTACTGCTGGTTCTGATCCTAGTAATCTGAATCAAATT TTATTTATGGATGTTATATGCTTTCTCACATTTATTGGGCACTGGTTAGCAGCTTAGATTTTTAATTTTATAGAAATTAT AGTGTTGGTACTTATTGATGTTGTATATAGTCAGAGGCAGACAGAAATTGAGGCTGCAATTGGCCCATGGCATAATTCGA GCCCAAGCATCTAATGTTGGTGTTGGATCTGGAGATCATGGAAGCAGTAATGAGAAAGACAGCCAGAATGTCTTTGAAAG AAATCCTATCAATGACAGTTCACCTAAAATGTGAGTACTATTTGATTGATTTTACTTGGTTGTGCAAGAGATGGCCCCTT AGACCCGTACATATGCTATTGAGATGACAGCCTTCGTTAAGAACTTATCAGGAGATGACTTTTGGTCTCAGCACTGTTTC TTTGGCGTAATGGTTGTTTATATGGTGTGGTCTCCCTTGAAATCTCAATTTTGCATGTGAAACTCTGTTGCAAACTTGCC TTGTAATATGTGCAATGCTTACTTATGAAATTAAGGATTGTTTGGAATTCCATATTTTAATCTTTAGTCTGAGTGTCTGA CCCATTTAATCTTACTTATCCACTTTTATTCTTTTGTTAGAGTGCTTTTACTCTTGCATGCAAATGCTAGGGCATGTGAT ATTATGTTGTTGTTTTTTCAAAAAATCTAAGATGACCATCGTCTTTATATTGGACCCAATCAAAGATCAAGTTCGTTCTA GTATTTTTGAATGAGGAATTGTGTTTCTCAATGCAATAAAACACTTGTTGTATGCCTCATACTGGCTTAGCATGGCGAGT CTGTGGAAGTGTGAAATATGTTCCTTCTGCAGTGTTCATAGAAGGTTTTAATTAAGGATTAAATGTGCATTCCATAAAAG GTGATAATTTGAAGAGAAATAGCAGTATTCATATCACCGCTGGAAATAATTAAGGATTAGTTGTTTATAAATCCCTGCTC CCTGATATCTCACATGTTCAGTGCATTAAAAAAAAAAACTCTTCAATTTATTCAGCAGATTGACAGTAGATATTATGTTT ATGGGTTTGTTCCCTTGAGAGATTTGACATGTCATTAAATTCTTTTCAATTGATTTTTTTGTTTGGTACTATGATCATTC ATCATTCATGGCTCTGTTACAATTCTAATATAAATATATGTTATTTTTTGGCAGTGTGAAACCTCCTAATCGGATCCCTT ATCCTATCTCTATAGCTCTTGTGCTGTTTGGATGCGCTCTTGTGTTTTCACTAATAGCCTCTTTGAAAGGGGGACCTACA GCAGTTCTAGAAGCAATCGCAAAATCAGGATTCACTGCTGCATTTACATTAATATTTGTTTCTGAGATTGGGGACAAGGT AATTTACTATTATCGCCAAGATTTTATGTCGTTCCTCTCTGTTTAAAATTTTCTATTTGATGCTTACTTTAAGTAAATAA TTGATTTTAAAAGGTTTAAAAAATTCTTTAGGCATAAAAAGTGCTCCATATTGTGGATAAAGTTAAATGAGTTTGTCAAG TAACTCTCGCCTAAATGCCTAAATATTTGGTTGTGGTTCTATAATGTTTTTTTGTCACATTTTCAATACGAATGAATAGT CGCTTGTTCACTTACCTTTCTGTTGCTTATTAATTAAGTATGAAGAATGAGTGTGGCCAAGAGAAAAGTCCACTTGGTCA TAGAGGCTTCAATACTATATAAGAATTTACTCTTCTTATAGCTTAAGCTATTAAGTCGGAGCTCGGTTATGGGATTTGTA TTTCTGCGTAATTTATTGGGTTGATGAAACATATCTGAATCACAGAGCTTGGTGATAGAAACCTATATTCTACCACCTCA ACATGTCACTAGTAAAATCATTTTCAGTTTGCTTAAGTTTATGCTATGGTTGTTTGTTAGAGGCATTTGCTTGTTGTTAG ACCAAATTTATCATTAACTTGTGAATAGAAAGTAGTGTTAAGGAATCAACAAGACAATGGTTTATGCAGAAGACTGTATT CTTTCCGGCAGTGGGGAGGGGGTGTTTGGGATAAAATATTCTCAGATACTTAGGCGCTCTAAAGATGCTAATCCTCTAGA GTTCACTGAGTGAGAATACCAACCTGTGCTCAGCAAAGAATGCTGTGGGTAATGCCCTTCATAGAGAAGCAATTCTTCTT TACTCTAAGGAACTATGCTTTAACTGTATTGGTAGGGTTGTAGGTGAGGGATTGCTTAAGTGAGGTTTCTAAATCATTTT TCCTTTGAGTCTCCTGTTACTCCACATCCACCATGAATCTCTCCATTTCCCAACTCCTCCCTTCACCATTACCCTCAAAC TCGTGCCACTATCTCTTGCAATCCCAACCGGCACGTGGCTGTGTACACTGTACATAGCTTTAATTAAAGCTGCTACTTAT AACTTCCTAGGAAGACCACTTGGGACCTACAGGAGTCAGTCGAGAAACTGTGTTAGCCACCCGGGTTCATATTACAAAAT GGTGCTAGAGTCACTCTGTGACTGATCAAATGGAAGGGTCAACCTGATGATGAAGCTTCATGGGAGAGAAATTTTTCCTC CCTTGTCAAGTTCTCAAGGGGTGGCGAGTGATAAGACCCTTTAGCTGAATGAAGCAAGCCTAAGGTATGGAAAGTTTATT CTAGGAGAAATAAGGGGGACCCACATGGAGGAGGATCTAGGAAATTAGTTATGTTGAGTGGGCAATGCATGGGAGGCCCA TGAAATGTGGTTAGATTGAGAATGTACTTATAGGAAAGTGATAATCCGGGGGGAAGAGTCAAGGATTAATCGTTTTTAGT GGGATGTAATATTCCTTGGTGTCTTTGCTTTTTTCTTCTTCTTAGTGTTTCAGCTATATTCTGTAATCCATTTTACCTAA GGAATATTAATACAATATCTCCTAATTCATTTCTTGTATTTGTTTCATTAATCGTACAGCTGTAGTGAATTATTTAAGAG GAGGCATTCTGTCAAATCTGATAAAAGGGGTTGCAAGTTCCGCAGCTAACAATTTAAAACTTAATAAGCAACTGTAAGAT TAGTATGTTTTTGGTTATGTGGATCAGCAGAACTCTTCAGGCTCCAAGAAAATATGAAATCAGTCATGAAAAAAATCTTA CATAGATTACAAATTTAGAATATAATTTGGTACTGTTTTTACTCCTTCTTGGAATGTCTTTTATGGTGGTTTTAGTTCTG TAAGGCTACAAACTTATCCCAAAAAAGGTAGAATTGGTAAGCTTTTATTTTTCATTAAACATTCATTGCACTTATGTGTA TTCATGGACCTAAAGTATCTTTTATCTTTTGACTAGACATTCTTTATTGCTGCACTCTTGGCAATGCAATATAAGAAGGG ATTGGTAAGTCCTCTTACTTCTTTTCTCATTAATGATGTCATGATATCTAATTTTCTTTGTTATTGTTTTAATTTGTTAC TTGTATACTTCCTTATTGTTAGGTTGAAATTTTCTTCACTATGGTTATTTCCTCTCTATTGTACTTTATGGACTAGCAAA TTCCTCTGTTCCTGTATGCTACTATCATGTGAGTCTGAACTGTGCTATATTGTAATGGCTTGATGGGTAGTGTTATAATA CTTGACACATTTATAGATAGATAGTGATAGTCAACTTAATATACTAACTTTCTATATATTGGTGGTTATTGAGTAGCTCC CTCATTGAGTGTACCCATAGTCCCATACAATTAACAAGAGATCCATGTGCATACCTAGACAAACAATTTTTAATCAAACA CTTTTTTGACATCTAGTAAGATGTGTAAAAATCACTGCCTCTCCTTCCTGCATTTCCTAACTTCGTTTGTGAATTAGATA GTTTCAATCATGATAGAACACATTTTAATCGGTAATCTAGCACCACACTCATTTTGGGACTATCTACCCATCAGTGCTCA TAGCCTCCTTCGATTATCATAACTCAGTGCAACTTATATTTCAGAAAATAACTATATACACTTTAACAAATACTATATAT ATTGACCAGGTCTTACTGGGATCAATTGGTGCTCTTACACTCATGTCAATCCTATCTGTTGTCATTGGCCGAATCTTTCA ATCAGTGCCTGCTCAGTTCCAGACAAGTAAGTTGTAGAATATAGTATTTTTATCCTGATAAGATTACTATATATTAGCAT GTCTCTCGAGTGGATTAATTCAGGTCACAACATCAATGGTGATGTGTAATACTGCAGTACTCATTTAGTGTAATCTGTTC GATAAATACAGGCACAGCTTGGCAATGAATTAGTATTCTGCGAGTAGGAATTGGAAAATCATTATATAGTATATTCTGTT TTTTTGAAATGTTACACAAGTTACAAATGAGAATTTGAGATGGTTTTTGTCATTAGATTCCTTTTCACATCATGGCTTGG TTTGTCTTCTCTAATCTCATTTTTTAAATTGGTTTTCATGTGAAGCATTCAGTACCGGTGTCAAAACTACAATGAACTTG CTAAATTTTCACCTCTAGTGGAATGATCTCTAACTGGTTGTACACAACACTGCACGTTCCATAAGACCTAAGTTTTATTC AAACTTACAACAAAACTAAAGCCTTTTTCCACAAGGTGAAGTGTGTGTGTGTATGTGAGTAGGGAGTGTATTAATTGAGA TTAGCTCCTTTTACGACTCATGTTCTCACTCGATAGACCCCATACTGCGTGTGAGGTACAAGGATGAAAAAACGCCGAAG TAACATTCCTAAAGTGAAGTGTGTTTTGGAGACCTTTCTTAATATTTTCAAGTATTGGCTTTTTTATTTTATAATATAAG TTAGCTTCTTCAAAAGTTACTTAATATTTTCACGTTTTGAATTTTTTTTAATTTTTAATTTTTTATATTTTTTAAGTCAT TTAAAAGCAAAATGAATTTTTTCTATACATGTCCTTCAAGTATCAAACATTATTTAAGTGTTAAAAAAATAAATTTTTAA TGAGCATTAGTTGGCACGATTCAATCTGCACAACAAATGATGAAAAATGATTTTAACTCATCAGCAAAGGAAAGAGAATA CATGACAGTGTATGATACAAGTAAACAAGTGATGGAAAGGAATCCACATTGGTTTTGTAGGTCTTTCTTGCAGAGTGCTT CGTGCCATTAAGCAAATTCCATTTTTAATAGGACACTTGATGACAGTGTCTGACGTGTCGTACAAATGCTACGCGTTGTG TCAGAAACACATGTGAATGCAAAGTTACATTTACCTTCTTCAACTGATTCATCTACAATAACTAACTTTTGATTTTCAGG CTATCAATCTGCCTTCACTATTCACTTTACTTTTAATATTGGATTTGTATGCCATATTTCTTTTCAGTGTTTGTTCAACT TTCATTGAATACTTTTTAGGTAATCTGTAGGCCTGAATTCTCTTTTTACTCCGGGGGAACTTAATCTTATGTTATTTTTC TTTGTGTGGTCTATCTACAGCCTTGCCAATTGGAGAATATGCGGCCGTTACTCTTCTATTGTTTTTTGGCCTAAAATCAA TAAAAGATGCGTGGGATCTTCCATCAGATGTGGTAAAGAAAGGTGATAACAGCAGTCCTGAACTTGATGAACTTGCTGAA GCAGAAGAGCTCGTGAAAGAAAAGGTTTGAACCCTATAAACATGAGTCCTGGACATTTATTAAGATATGAATTTTCTGGC TACGGTTTATAATACTCAACTACTCAGTAATATATGCTTGGCTGGTATATATGGTGAAATTATATTTACCTTCATACGGG CAATTTGTCTGTCATTTCACCCTTTAACTATGTCTTTCCAAAACATTTTCAGGCGTCAACACGGCTTTCAAATCCACTTG AGATTATCTGGAAATCATTCAGCCTTGTATTTTTTGCTGTAAGGCTTCTCTTCTCTAATCCTTTTGTTTTGGGCAACAGC TTAGCATGCAATTTTGATTGTAAATTCACCACTAATAAAACAAAAGTGTATTAATAACTAATGCATTGTGAAAATCTTAC TATTTGTTGTATTTGCTCAAATGTTCATATTGATCTCCATTGTTTTTATGTCAGAATGCCGAGTCTCAAACTATTTCCCC TTGGAACATTAAATTTCATGTTGTTTGTTGTGACTAATCAGCACTACTTATACAGAATCAAGCATTTATATTATATTGGC TTGTGTTATCTGGCATGAATTTTAACTTAGTAACTGGAATTGCCTAGGAATGGGGAGATCGCTCAATGCTTGCAACAATT GCGCTGGCGGCTGCTCAGGTGCAGTTTTAAGCTCTGAGAATAACACAGAGCTCGTTTGAATACAGACCAAAGAGCACTTA TTGGGTCTTATCTAATAAAAAAAGCACTAAATAAACTCCAATAAGTGCTGTATGGTATGCATCCAAACGGGTTCATAACA TGTTTTGCTAAATAAATATATTAACATGAGCAATATCTTATTCTTTACAGTCTCCTTGGGGTGTAGCAAGCGGAGCAATT GCCGGACACCTACTTGCAACAACTATTGCCATTCTTGGAGGAGCATTCCTTGCTAACTACATATCTGAAAAACTGGTACA AGTCATAACCTGATTAGCCATTGAATGCTTGTGTTAACTTGATATCTAATTGAAGTCACTTCATCTTCTATCAGGTTGGT TACTTGGGTGGAGGGCTGTTTCTAATTTTTGCTGTAGCCACCTTTTTTGGGGTTTTCTGATTGATTGCAGCCTAGCCCTA GTTCATTTTTTGTGTGTGCAATATATCACTAATGGAGATAAAAAGGATACAAGCTCAAACGCGGAATGGATGCTGAGAAA ACAGAGGAAAACTCATACTTCAACTTTGTTGATATCATTGAGTAGACATTAGGAGCAAATTGCTCACATGGTTAGAGAAT AAGAAGCATGAAATCTGCCATTAGAGTTAAAGGGTATGAGGATAAACTTGTGTAGTGCTCTCTCTTGAGACTAGCAGCTC TTGTAATGCGTGCTTCTTGTATTTGTAAAACTACATCAAATTTAGCCATTATTGGAAAAAAGTGCAAGCTTGTTTACTGA ACACTTATAGACTGTCACTTGTTAGGTAATATAAGGATGTTTGGTATTTTGTGATTAGTTGCATTACAATAATTTGTGTT TCCAAACATGTTTGGTTTTCAGTTGATGCCAATGGAACACCAACAGAGCTTCTTTCTTCTTTTCACGTTGGGCACCTCCT AATGTGTAGTCTCAATTTTCAATGCACTAAACGTTGTTTTTTACAAAAAACCAAACACGTATTTGAGATCGTTTGGATAT CCATTAGAAAGTAGGAAGATGGGAAGACAACACATTCTCCTATACGGTAACAATATATGCAATCACTTTTTGGGTAACAA T
CDS sequence (LotjaGi6g1v0013000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGTTTTGGTCTTCACTCACCCTTGCTTTCTAAGGGAAAGCCTCCTCCTTTGTTGGCAGTGGTGGACGCATTACC ATTCTGTGCTTGTTCCTCTAAAACCACTAGCTTAACCACATTCAGAGGCAGACAGAAATTGAGGCTGCAATTGGCCCATG GCATAATTCGAGCCCAAGCATCTAATGTTGGTGTTGGATCTGGAGATCATGGAAGCAGTAATGAGAAAGACAGCCAGAAT GTCTTTGAAAGAAATCCTATCAATGACAGTTCACCTAAAATTGTGAAACCTCCTAATCGGATCCCTTATCCTATCTCTAT AGCTCTTGTGCTGTTTGGATGCGCTCTTGTGTTTTCACTAATAGCCTCTTTGAAAGGGGGACCTACAGCAGTTCTAGAAG CAATCGCAAAATCAGGATTCACTGCTGCATTTACATTAATATTTGTTTCTGAGATTGGGGACAAGACATTCTTTATTGCT GCACTCTTGGCAATGCAATATAAGAAGGGATTGGTCTTACTGGGATCAATTGGTGCTCTTACACTCATGTCAATCCTATC TGTTGTCATTGGCCGAATCTTTCAATCAGTGCCTGCTCAGTTCCAGACAACCTTGCCAATTGGAGAATATGCGGCCGTTA CTCTTCTATTGTTTTTTGGCCTAAAATCAATAAAAGATGCGTGGGATCTTCCATCAGATGTGGTAAAGAAAGGTGATAAC AGCAGTCCTGAACTTGATGAACTTGCTGAAGCAGAAGAGCTCGTGAAAGAAAAGGCGTCAACACGGCTTTCAAATCCACT TGAGATTATCTGGAAATCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGATCGCTCAATGCTTGCAACAATTGCGCTGG CGGCTGCTCAGTCTCCTTGGGGTGTAGCAAGCGGAGCAATTGCCGGACACCTACTTGCAACAACTATTGCCATTCTTGGA GGAGCATTCCTTGCTAACTACATATCTGAAAAACTGGTTGGTTACTTGGGTGGAGGGCTGTTTCTAATTTTTGCTGTAGC CACCTTTTTTGGGGTTTTCTGA
Protein sequence (LotjaGi6g1v0013000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGFGLHSPLLSKGKPPPLLAVVDALPFCACSSKTTSLTTFRGRQKLRLQLAHGIIRAQASNVGVGSGDHGSSNEKDSQN VFERNPINDSSPKIVKPPNRIPYPISIALVLFGCALVFSLIASLKGGPTAVLEAIAKSGFTAAFTLIFVSEIGDKTFFIA ALLAMQYKKGLVLLGSIGALTLMSILSVVIGRIFQSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSDVVKKGDN SSPELDELAEAEELVKEKASTRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALAAAQSPWGVASGAIAGHLLATTIAILG GAFLANYISEKLVGYLGGGLFLIFAVATFFGVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 100 | 100 | - | – | |
| PANTHER | 25 | 353 | 329 | 3.3E-161 | ||
| PANTHER | 25 | 353 | 329 | 3.3E-161 | – | |
| MobiDBLite | 62 | 93 | 32 | - | – | |
| MobiDBLite | 65 | 87 | 23 | - | – | |
| Phobius | 101 | 122 | 22 | - | – | |
| TMHMM | 103 | 122 | 20 | - | – | |
| Phobius | 123 | 141 | 19 | - | – | |
| Pfam | 142 | 220 | 79 | 4.0E-19 | ||
| Phobius | 142 | 164 | 23 | - | – | |
| TMHMM | 142 | 164 | 23 | - | – | |
| ProSitePatterns | 151 | 160 | 10 | - | ||
| Phobius | 165 | 170 | 6 | - | – | |
| TMHMM | 171 | 193 | 23 | - | – | |
| Phobius | 171 | 194 | 24 | - | – | |
| Phobius | 195 | 199 | 5 | - | – | |
| Phobius | 200 | 221 | 22 | - | – | |
| Phobius | 222 | 273 | 52 | - | – | |
| Pfam | 272 | 345 | 74 | 6.3E-21 | ||
| Phobius | 274 | 296 | 23 | - | – | |
| Phobius | 297 | 301 | 5 | - | – | |
| Phobius | 302 | 325 | 24 | - | – | |
| TMHMM | 306 | 328 | 23 | - | – | |
| Phobius | 326 | 331 | 6 | - | – | |
| Phobius | 332 | 352 | 21 | - | – | |
| TMHMM | 333 | 352 | 20 | - | – | |
| Phobius | 353 | 353 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0013000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…