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Lj0g3v0306819.1

Overview

Field	Value
Gene ID	Lj0g3v0306819
Transcript ID	Lj0g3v0306819.1
Related isoforms 3	Lj0g3v0306819.2 Lj0g3v0306819.3 Lj0g3v0306819.4
Lotus japonicus genome version	MG20 v3.0
Description	Ubiquitin carboxyl-terminal hydrolase family protein [Medicago truncatula] gi\|357513213\|ref\|XP_003626895.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:2.60.210.10 View details on G3DSA:2.60.210.10 Search for proteins/transripts with this domain View external data on G3DSA:2.60.210.10	32	164	133	1.80E-15	IPR008974 Show description in modal box View details on IPR008974 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50144 View details on PS50144 Search for proteins/transripts with this domain View external data on PS50144	39	162	124	19.701	IPR002083 Show description in modal box View details on IPR002083 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00121 View details on cd00121 Search for proteins/transripts with this domain View external data on cd00121	41	162	122	1.50E-24	–
SMART	SM00061 View details on SM00061 Search for proteins/transripts with this domain View external data on SM00061	41	143	103	3.90E-04	IPR002083 Show description in modal box View details on IPR002083 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF49599 View details on SSF49599 Search for proteins/transripts with this domain View external data on SSF49599	41	164	124	1.31E-25	IPR008974 Show description in modal box View details on IPR008974 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00917 View details on PF00917 Search for proteins/transripts with this domain View external data on PF00917	47	162	116	1.30E-08	IPR002083 Show description in modal box View details on IPR002083 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	186	223	38	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	341	368	28	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj0g3v0306819.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0306819.1, powered by CORGI.

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