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Lj0g3v0306819.1

Overview

Field Value
Gene ID Lj0g3v0306819
Transcript ID Lj0g3v0306819.1
Related isoforms 3
Lotus japonicus genome version MG20 v3.0
Description Ubiquitin carboxyl-terminal hydrolase family protein [Medicago truncatula] gi|357513213|ref|XP_003626895.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 32 164 133 1.80E-15
ProSiteProfiles 39 162 124 19.701
CDD 41 162 122 1.50E-24
SMART 41 143 103 3.90E-04
SUPERFAMILY 41 164 124 1.31E-25
Pfam 47 162 116 1.30E-08
MobiDBLite 186 223 38
Coils 341 368 28

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj0g3v0306819.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0306819.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.