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Lj1g3v3182290.1

Overview

Field Value
Gene ID Lj1g3v3182290
Transcript ID Lj1g3v3182290.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description ACT domain repeat 4 isoform 2 [Theobroma cacao] gi|508707839|gb|EOX99735.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 335 335 5.00E-240
PANTHER 1 335 335 5.00E-240
SUPERFAMILY 15 85 71 5.56E-11
Gene3D 16 69 54 6.40E-05
Pfam 17 66 50 1.00E-06
ProSiteProfiles 18 95 78 10.463
SUPERFAMILY 104 175 72 7.64E-13
Gene3D 104 161 58 1.20E-16
Pfam 106 154 49 4.20E-10
ProSiteProfiles 107 184 78 13.186
CDD 239 313 75 9.03E-37

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of Lj1g3v3182290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3182290.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.