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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002912
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 108 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 5.819s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0020279.1
n.a. ACT-like superfamily protein isoform 1 [Theobroma cacao] gi|508716051|gb|EOY07948.1| chr0 8136779 8140736 -
2 domain predictions
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Lj0g3v0088569.1
n.a. ACT domain repeat 3 isoform 1 [Theobroma cacao] gi|508724613|gb|EOY16510.1| chr0 36211784 36219728 +
3 domain predictions
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Lj0g3v0088569.2
n.a. ACT domain repeat 3 isoform 3 [Theobroma cacao] gi|508724615|gb|EOY16512.1| chr0 36215283 36219728 +
3 domain predictions
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Lj0g3v0101939.1
n.a. ACT domain-containing protein isoform 2 [Theobroma cacao] gi|508786848|gb|EOY34104.1| chr0 43273546 43277718 +
2 domain predictions
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Lj0g3v0185639.1
n.a. ACT domain repeat 3 isoform 1 [Theobroma cacao] gi|508724613|gb|EOY16510.1| chr0 90404887 90412077 -
3 domain predictions
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Lj0g3v0230639.1
n.a. ACT-like superfamily protein isoform 1 [Theobroma cacao] gi|508716051|gb|EOY07948.1| chr0 119488659 119492568 -
2 domain predictions
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Lj1g3v2264920.1
n.a. PREDICTED: tyrosine-protein kinase TXK-like [Glycine max] gi|356509608|ref|XP_003523539.1| chr1 26568280 26576170 -
2 domain predictions
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Lj1g3v2264920.2
n.a. PREDICTED: tyrosine-protein kinase TXK-like [Glycine max] gi|356509608|ref|XP_003523539.1| chr1 26568280 26576170 -
2 domain predictions
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Lj1g3v3182290.1
n.a. ACT domain repeat 4 isoform 2 [Theobroma cacao] gi|508707839|gb|EOX99735.1| chr1 36138768 36141974 +
3 domain predictions
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Lj1g3v3182290.2
n.a. ACT domain repeat 4 isoform 2 [Theobroma cacao] gi|508707839|gb|EOX99735.1| chr1 36138879 36141102 +
3 domain predictions
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Lj1g3v3182290.3
n.a. ACT domain repeat 4 isoform 2 [Theobroma cacao] gi|508707839|gb|EOX99735.1| chr1 36138879 36141974 +
3 domain predictions
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Lj1g3v3847460.1
n.a. ACT domain repeat 6 [Theobroma cacao] gi|508710953|gb|EOY02850.1| chr1 44299164 44302908 +
3 domain predictions
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Lj1g3v3904250.1
n.a. PREDICTED: aspartokinase 1, chloroplastic-like [Glycine max] gi|356570251|ref|XP_003553303.1| chr1 45385385 45392373 +
2 domain predictions
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Lj1g3v4636600.1
n.a. ACT-like superfamily protein isoform 1 [Theobroma cacao] gi|508716051|gb|EOY07948.1| chr1 55214166 55217508 -
3 domain predictions
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Lj2g3v1225620.1
n.a. ACR4 [Medicago truncatula] gi|357487953|ref|XP_003614264.1| chr2 19462894 19468868 +
3 domain predictions
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Lj2g3v1647790.1
n.a. PREDICTED: serine/threonine-protein kinase CTR1-like [Glycine max] gi|356538347|ref|XP_003537665.1| chr2 25695222 25703753 -
2 domain predictions
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Lj2g3v1649160.1
n.a. PREDICTED: serine/threonine-protein kinase CTR1-like [Glycine max] gi|356538347|ref|XP_003537665.1| chr2 25786409 25797031 +
2 domain predictions
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Lj2g3v1659470.1
n.a. PREDICTED: serine/threonine-protein kinase CTR1-like [Glycine max] gi|356538347|ref|XP_003537665.1| chr2 25842434 25850963 -
2 domain predictions
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Lj2g3v1981850.1
n.a. ACT domain-containing protein [Medicago truncatula] gi|357482521|ref|XP_003611547.1| chr2 28814671 28816931 -
3 domain predictions
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Lj2g3v2002690.1
n.a. PREDICTED: Protein-PII uridylyltransferase [Glycine max] gi|356540171|ref|XP_003538563.1| chr2 30418435 30421501 -
3 domain predictions
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Lj3g3v1404080.1
n.a. Transcription factor bHLH61 isoform 1 [Theobroma cacao] gi|508710735|gb|EOY02632.1| chr3 18000289 18002321 +
2 domain predictions
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Lj3g3v3087250.1
n.a. PREDICTED: arogenate dehydratase/prephenate dehydratase 2, chloroplastic-like [Glycine max] gi|356539096|ref|XP_003538036.1| chr3 38856782 38861171 +
2 domain predictions
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Lj4g3v0149480.1
n.a. PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Glycine max] gi|356563073|ref|XP_003549790.1| chr4 1608736 1626638 -
2 domain predictions
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Lj4g3v1236970.2
n.a. PREDICTED: formyltetrahydrofolate deformylase-like [Glycine max] gi|356563338|ref|XP_003549921.1| chr4 18400265 18403774 -
2 domain predictions
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Lj4g3v1289550.1
n.a. PREDICTED: Protein-PII uridylyltransferase [Glycine max] gi|356540171|ref|XP_003538563.1| chr4 19085023 19087947 +
3 domain predictions
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Lj4g3v2578310.1
n.a. PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic-like [Cicer arietinum] gi|502140918|ref|XP_004504375.1| chr4 34648119 34659945 -
3 domain predictions
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Lj4g3v2689680.1
n.a. Acetolactate synthase small subunit [Medicago truncatula] gi|357519313|ref|XP_003629945.1| chr4 36183383 36188742 +
3 domain predictions
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Lj4g3v2689680.2
n.a. PREDICTED: acetolactate synthase small subunit 2, chloroplastic-like isoform X2 [Cicer arietinum] gi|502093821|ref|XP_004490063.1| chr4 36183494 36191789 +
3 domain predictions
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Lj5g3v1955080.1
n.a. PREDICTED: serine/threonine-protein kinase HT1-like [Glycine max] gi|356534057|ref|XP_003535574.1| chr5 27620416 27632064 +
2 domain predictions
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Lj5g3v1955080.2
n.a. PREDICTED: serine/threonine-protein kinase HT1-like [Glycine max] gi|356534057|ref|XP_003535574.1| chr5 27620416 27632064 +
2 domain predictions
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Lj5g3v2113470.2
n.a. PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Glycine max] gi|356536156|ref|XP_003536605.1| chr5 30449031 30452111 +
3 domain predictions
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Lj5g3v2240880.1
n.a. ACT domain-containing protein isoform 1 [Theobroma cacao] gi|508727355|gb|EOY19252.1| chr5 32214221 32219004 -
2 domain predictions
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Lj5g3v2240880.2
n.a. ACT domain-containing protein isoform 1 [Theobroma cacao] gi|508727355|gb|EOY19252.1| chr5 32214221 32219004 -
2 domain predictions
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Lj5g3v2258350.1
n.a. ACT-domain-containing protein kinase [Lotus japonicus] gi|283132359|dbj|BAI63585.1| chr5 32758287 32765684 -
2 domain predictions
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Lj6g3v0292010.1
n.a. PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic-like isoform X1 [Cicer arietinum] gi|502135208|ref|XP_004502255.1| chr6 3022054 3035259 +
3 domain predictions
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Lj6g3v2006830.1
n.a. PREDICTED: glycogen phosphorylase 1-like [Cicer arietinum] gi|502078074|ref|XP_004485832.1| chr6 23621147 23631898 +
2 domain predictions
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Lj6g3v2006830.2
n.a. PREDICTED: glycogen phosphorylase 1-like [Cicer arietinum] gi|502078074|ref|XP_004485832.1| chr6 23621147 23631898 +
2 domain predictions
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LotjaGi0g1v0001500.1
n.a. ACT domain-containing family protein; TAIR: AT2G36840.1 ACT-like superfamily protein; Swiss-Prot: sp|Q9SJM1|ACR10_ARATH ACT domain-containing protein ACR10; TrEMBL-Plants: tr|V7BEW8|V7BEW8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi0g1v0001500 LjG1.1_chr0 1848374 1857376 -
3 domain predictions
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LotjaGi1g1v0165800.1
n.a. Bifunctional uridylyltransferase/uridylyl-removing enzyme; TAIR: AT1G76990.1 ACT domain repeat 3; Swiss-Prot: sp|O49285|ACR3_ARATH ACT domain-containing protein ACR3; TrEMBL-Plants: tr|A0A0L9V140|A0A0L9V140_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0165800 LjG1.1_chr1 31469958 31478509 +
3 domain predictions
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LotjaGi1g1v0165800.2
n.a. Bifunctional uridylyltransferase/uridylyl-removing enzyme; TAIR: AT1G76990.1 ACT domain repeat 3; Swiss-Prot: sp|O49285|ACR3_ARATH ACT domain-containing protein ACR3; TrEMBL-Plants: tr|K7M745|K7M745_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0165800 LjG1.1_chr1 31472816 31477139 +
3 domain predictions
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LotjaGi1g1v0165800.3
n.a. Bifunctional uridylyltransferase/uridylyl-removing enzyme; TAIR: AT1G76990.1 ACT domain repeat 3; Swiss-Prot: sp|O49285|ACR3_ARATH ACT domain-containing protein ACR3; TrEMBL-Plants: tr|K7M745|K7M745_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0165800 LjG1.1_chr1 31472816 31477163 +
3 domain predictions
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LotjaGi1g1v0165800.4
n.a. Bifunctional uridylyltransferase/uridylyl-removing enzyme; TAIR: AT1G76990.1 ACT domain repeat 3; Swiss-Prot: sp|O49285|ACR3_ARATH ACT domain-containing protein ACR3; TrEMBL-Plants: tr|A0A0L9V140|A0A0L9V140_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0165800 LjG1.1_chr1 31472816 31478130 +
3 domain predictions
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LotjaGi1g1v0271400.1
n.a. Bifunctional uridylyltransferase/uridylyl-removing enzyme; TAIR: AT1G76990.1 ACT domain repeat 3; Swiss-Prot: sp|O49285|ACR3_ARATH ACT domain-containing protein ACR3; TrEMBL-Plants: tr|K7KM40|K7KM40_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0271400 LjG1.1_chr1 66240940 66248501 +
3 domain predictions
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LotjaGi1g1v0271400.2
n.a. Bifunctional uridylyltransferase/uridylyl-removing enzyme; TAIR: AT1G76990.1 ACT domain repeat 3; Swiss-Prot: sp|O49285|ACR3_ARATH ACT domain-containing protein ACR3; TrEMBL-Plants: tr|K7KM40|K7KM40_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0271400 LjG1.1_chr1 66241113 66248501 +
3 domain predictions
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LotjaGi1g1v0271400.3
n.a. Bifunctional uridylyltransferase/uridylyl-removing enzyme; TAIR: AT1G76990.1 ACT domain repeat 3; Swiss-Prot: sp|O49285|ACR3_ARATH ACT domain-containing protein ACR3; TrEMBL-Plants: tr|K7KM40|K7KM40_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0271400 LjG1.1_chr1 66244561 66248162 +
3 domain predictions
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LotjaGi1g1v0271400.4
n.a. Bifunctional uridylyltransferase/uridylyl-removing enzyme; TAIR: AT1G76990.1 ACT domain repeat 3; Swiss-Prot: sp|O49285|ACR3_ARATH ACT domain-containing protein ACR3; TrEMBL-Plants: tr|K7KM40|K7KM40_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0271400 LjG1.1_chr1 66244693 66248162 +
3 domain predictions
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LotjaGi1g1v0432900.1
n.a. Protein kinase, putative; TAIR: AT4G38470.1 ACT-like protein tyrosine kinase family protein; Swiss-Prot: sp|F4JTP5|STY46_ARATH Serine/threonine-protein kinase STY46; TrEMBL-Plants: tr|I1JSY5|I1JSY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0432900 LjG1.1_chr1 92770435 92783391 -
2 domain predictions
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LotjaGi1g1v0432900.2
n.a. Protein kinase, putative; TAIR: AT4G35780.1 ACT-like protein tyrosine kinase family protein; Swiss-Prot: sp|Q8RWL6|STY17_ARATH Serine/threonine-protein kinase STY17; TrEMBL-Plants: tr|A0A151TCQ4|A0A151TCQ4_CAJCA Putative serine/threonine-protein kinase DDB-G0267514; Found in the gene: LotjaGi1g1v0432900 LjG1.1_chr1 92770435 92783391 -
2 domain predictions
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LotjaGi1g1v0432900.3
n.a. Protein kinase, putative; TAIR: AT4G38470.1 ACT-like protein tyrosine kinase family protein; Swiss-Prot: sp|F4JTP5|STY46_ARATH Serine/threonine-protein kinase STY46; TrEMBL-Plants: tr|I1JSY5|I1JSY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0432900 LjG1.1_chr1 92775391 92782483 -
2 domain predictions
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LotjaGi1g1v0432900.4
n.a. Protein kinase, putative; TAIR: AT4G38470.1 ACT-like protein tyrosine kinase family protein; Swiss-Prot: sp|F4JTP5|STY46_ARATH Serine/threonine-protein kinase STY46; TrEMBL-Plants: tr|K7KHP1|K7KHP1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0432900 LjG1.1_chr1 92775391 92783360 -
2 domain predictions
 –