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Lj1g3v4027110.2

Overview

Field Value
Gene ID Lj1g3v4027110
Transcript ID Lj1g3v4027110.2
Related isoforms 3
Lotus japonicus genome version MG20 v3.0
Description CRAL-TRIO domain-containing protein [Medicago truncatula] gi|357509005|ref|XP_003624791.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10174
8 260 253 2.10E-173 –
PANTHER
PTHR10174:SF128
8 260 253 2.10E-173 –
SUPERFAMILY
SSF46938
17 84 68 6.41E-16
IPR011074
Gene3D
G3DSA:3.40.525.10
17 264 248 1.60E-53
IPR001251
SMART
SM01100
43 68 26 0.0013
IPR011074
ProSiteProfiles
PS50191
82 245 164 17.511
IPR001251
SUPERFAMILY
SSF52087
82 260 179 9.16E-40
IPR001251
SMART
SM00516
88 242 155 5.40E-37
IPR001251
Pfam
PF00650
98 240 143 1.30E-28
IPR001251
CDD
cd00170
99 240 142 1.86E-34 –
MobiDBLite
mobidb-lite
311 330 20 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj1g3v4027110.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4027110.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.