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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2517640 |
| Transcript ID | Lj3g3v2517640.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | zinc ion transmembrane transporter [Medicago sativa] gi|238684576|gb|ACR54455.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 51 | 51 | – | – | |
| PANTHER | 39 | 192 | 154 | 4.20E-133 | ||
| PANTHER | 39 | 192 | 154 | 4.20E-133 | – | |
| SUPERFAMILY | 46 | 178 | 133 | 5.49E-50 | – | |
| TIGRFAM | 49 | 344 | 296 | 2.30E-77 | ||
| Gene3D | 50 | 178 | 129 | 2.00E-59 | ||
| TMHMM | 52 | 71 | 20 | – | – | |
| Pfam | 52 | 329 | 278 | 3.90E-47 | ||
| Phobius | 52 | 71 | 20 | – | – | |
| Phobius | 72 | 82 | 11 | – | – | |
| TMHMM | 82 | 104 | 23 | – | – | |
| Phobius | 83 | 102 | 20 | – | – | |
| Phobius | 103 | 113 | 11 | – | – | |
| Phobius | 114 | 141 | 28 | – | – | |
| TMHMM | 116 | 138 | 23 | – | – | |
| Phobius | 142 | 152 | 11 | – | – | |
| TMHMM | 153 | 175 | 23 | – | – | |
| Phobius | 153 | 174 | 22 | – | – | |
| Phobius | 175 | 270 | 96 | – | – | |
| MobiDBLite | 180 | 263 | 84 | – | – | |
| Gene3D | 261 | 329 | 69 | 2.00E-59 | ||
| SUPERFAMILY | 261 | 330 | 70 | 5.49E-50 | – | |
| PANTHER | 262 | 346 | 85 | 4.20E-133 | – | |
| PANTHER | 262 | 346 | 85 | 4.20E-133 | ||
| Phobius | 271 | 294 | 24 | – | – | |
| TMHMM | 271 | 293 | 23 | – | – | |
| Phobius | 295 | 299 | 5 | – | – | |
| Phobius | 300 | 321 | 22 | – | – | |
| TMHMM | 303 | 325 | 23 | – | – | |
| Phobius | 322 | 346 | 25 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj3g3v2517640.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2517640.2, powered by CORGI.
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