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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3246310 |
| Transcript ID | Lj3g3v3246310.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Os02g0195500 [Oryza sativa Japonica Group] gi|115444811|ref|NP_001046185.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 17 | 17 | – | – | |
| Phobius | 1 | 2 | 2 | – | – | |
| SignalP | 1 | 19 | 19 | – | – | |
| PANTHER | 1 | 847 | 847 | 0 | – | |
| Phobius | 1 | 19 | 19 | – | – | |
| PANTHER | 1 | 847 | 847 | 0 | – | |
| Phobius | 3 | 14 | 12 | – | – | |
| Phobius | 15 | 19 | 5 | – | – | |
| Phobius | 20 | 847 | 828 | – | – | |
| Pfam | 106 | 630 | 525 | 9.30E-133 | ||
| SUPERFAMILY | 160 | 457 | 298 | 8.93E-08 | ||
| Gene3D | 247 | 432 | 186 | 3.40E-05 | ||
| Gene3D | 669 | 697 | 29 | 1.90E-05 | – | |
| SUPERFAMILY | 747 | 827 | 81 | 8.37E-08 | ||
| Gene3D | 752 | 826 | 75 | 1.90E-05 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | L-arabinose metabolic process | The chemical reactions and pathways involving L-arabinose, the D-enantiomer of arabino-pentose. L-arabinose occurs free, e.g. in the heartwood of many conifers, and in the combined state, in both furanose and pyranose forms, as a constituent of various plant hemicelluloses, bacterial polysaccharides etc. | ||
| Molecular function | Alpha-L-arabinofuranosidase activity | Catalysis of the hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides. |
Expression pattern of Lj3g3v3246310.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3246310.1, powered by CORGI.
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