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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1988770 |
| Transcript ID | Lj5g3v1988770.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | NADPH oxidase [Medicago truncatula] gi|357443869|ref|XP_003592212.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 528 | 528 | 0 | – | |
| PANTHER | 1 | 528 | 528 | 0 | – | |
| Phobius | 1 | 6 | 6 | – | – | |
| TMHMM | 7 | 26 | 20 | – | – | |
| Phobius | 7 | 26 | 20 | – | – | |
| Phobius | 27 | 54 | 28 | – | – | |
| TMHMM | 53 | 75 | 23 | – | – | |
| Phobius | 55 | 75 | 21 | – | – | |
| Phobius | 76 | 99 | 24 | – | – | |
| SFLD | 96 | 699 | 604 | 0 | – | |
| Phobius | 100 | 126 | 27 | – | – | |
| TMHMM | 106 | 128 | 23 | – | – | |
| Phobius | 127 | 197 | 71 | – | – | |
| Pfam | 161 | 279 | 119 | 3.90E-17 | ||
| SFLD | 191 | 686 | 496 | 0 | – | |
| Phobius | 198 | 221 | 24 | – | – | |
| TMHMM | 198 | 220 | 23 | – | – | |
| Phobius | 222 | 232 | 11 | – | – | |
| Phobius | 233 | 253 | 21 | – | – | |
| TMHMM | 233 | 255 | 23 | – | – | |
| PRINTS | 238 | 261 | 24 | 4.00E-07 | ||
| Phobius | 254 | 272 | 19 | – | – | |
| PRINTS | 263 | 283 | 21 | 4.00E-07 | ||
| TMHMM | 270 | 301 | 32 | – | – | |
| Phobius | 273 | 301 | 29 | – | – | |
| Phobius | 302 | 529 | 228 | – | – | |
| SUPERFAMILY | 307 | 391 | 85 | 8.08E-05 | ||
| ProSiteProfiles | 309 | 413 | 105 | 12.358 | ||
| Pfam | 315 | 410 | 96 | 1.80E-20 | ||
| CDD | 316 | 494 | 179 | 1.21E-34 | – | |
| SUPERFAMILY | 401 | 471 | 71 | 8.25E-12 | – | |
| Gene3D | 416 | 495 | 80 | 5.60E-26 | – | |
| Pfam | 417 | 683 | 267 | 4.50E-31 | ||
| Phobius | 530 | 555 | 26 | – | – | |
| TMHMM | 531 | 553 | 23 | – | – | |
| Phobius | 556 | 574 | 19 | – | – | |
| TMHMM | 573 | 595 | 23 | – | – | |
| Phobius | 575 | 595 | 21 | – | – | |
| Phobius | 596 | 699 | 104 | – | – | |
| PRINTS | 615 | 633 | 19 | 4.00E-07 | ||
| PANTHER | 642 | 699 | 58 | 0 | – | |
| PANTHER | 642 | 699 | 58 | 0 | – | |
| Gene3D | 647 | 694 | 48 | 5.60E-26 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj5g3v1988770.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1988770.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.