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Lj6g3v0774920.1

Overview

Field Value
Gene ID Lj6g3v0774920
Transcript ID Lj6g3v0774920.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA damage response protein WSS1-like [Cicer arietinum] gi|502123501|ref|XP_004498138.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51397
1 157 157 36.953
IPR013536
Pfam
PF08325
6 157 152 1.60E-41
IPR013536
PANTHER
PTHR23153:SF37
9 165 157 6.60E-57 –
PANTHER
PTHR23153
9 165 157 6.60E-57 –
MobiDBLite
mobidb-lite
87 106 20 – –
MobiDBLite
mobidb-lite
191 220 30 – –
MobiDBLite
mobidb-lite
257 278 22 – –
SUPERFAMILY
SSF90209
291 319 29 6.41E-08
IPR001876
ProSiteProfiles
PS50199
292 321 30 8.524
IPR001876
SMART
SM00547
294 318 25 7.00E-05
IPR001876
ProSitePatterns
PS01358
296 315 20 –
IPR001876
ProSiteProfiles
PS50199
326 355 30 8.377
IPR001876
SMART
SM00547
328 352 25 0.071
IPR001876
ProSitePatterns
PS01358
330 349 20 –
IPR001876

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj6g3v0774920.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0774920.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.