Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi1g1v0010900
Transcript ID	LotjaGi1g1v0010900.3
Related isoforms 6	LotjaGi1g1v0010900.1 LotjaGi1g1v0010900.2 LotjaGi1g1v0010900.4 LotjaGi1g1v0010900.5 LotjaGi1g1v0010900.6 LotjaGi1g1v0010900.7
Lotus japonicus genome version	Gifu v1.2
Description	Enolase; TAIR: AT2G29560.1 cytosolic enolase; Swiss-Prot: sp\|Q9ZW34\|ENO3_ARATH Cytosolic enolase 3; TrEMBL-Plants: tr\|A0A151U2G1\|A0A151U2G1_CAJCA Gamma-enolase; Found in the gene: LotjaGi1g1v0010900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:1331980..1336224) extracted from Lotus japonicus Gifu genome v1.2.

GTGCCAAACTACTATTATGTTTTACATAAAGTCACTTATTTTCTATGTAATGCATGCTTGGGTAGTGTTGTTATGTATTT CTCTGCTATAAAATGATTACTTTTAGAGGTGTTGTGGTTATATTGATTTCTACTTTTGATCTGATTTTCTGAGAATGTTA TCAGCTTTAGAGAAGCCCTGGATCTTGTAAAGGAGGCCATTAGCAGAACTGGTTATAATGAGAAAATAAAGATAGCCCTT GATGTCGCTGCTACAAATTTTTGCATAGGTAATTATAATTCACTGCCCCTTATTTGCTTTTAGATTATTAGAAGATGGAA TTTGGTAATTCTTGCTCACTCTAATATTGCTTGTTGCTAACATAATGAGAAATATGTTAACTGGTTCACAGCATCATCTA CAAAAAATAAATGCAGTTTATTTCAATGTGCTATCATTGCAAAATAATATTAGCTTTGTTCAGAGTTGTAAAAATAGGAA TCTTATATAGCACTTCAATAATGCTATCAATACCGAAGACTTATAGTGATCTCTCATCTCTCAATTTACATTCAATTTAG GGATATCGTCACGACTTGGTTTCTGAATCTACTTATATTTGTGACCTGGTATGAATCATAACTCTCTTTTTTTTGGCGGA GGAGGGGGGGGGGGGGAGGGGGTAATATGTAACATTTTCATTCAGATATTAATAACTGATAAGAACCTTGGGACAACCAT ACCACAAAAGCGCTGTTGTAGTTGGAGAGCCCAGGGCTTTATAAATCCCACATTAGAATCCCATACTTCCAATGTGGGAC TCAAGTCTCATACCTTGCAATTGGGTCCTAACATCTCTCCACTAATCCTTTAACTAGTCCGCAAACAGTAACTGAGAGAC ATGGTGGAAGGCCCTGATATCAAGAACCTTGGCAGAACCATACGACAAAAGCTAGGTGTTGTAGTTGGAGAGCCCAAAGC CTTATAAATCCCACATTAGAATCCCATATTTCCAATGTGAGACTCAAGTCTCATACCTTGCACTTAGGTCCTAGCAGATT TATTTTGGGTTTACATACTCTTTGAAAAATTAGAGAGAGAAAATATGGCTGTGGAAGTTTAACACAATGTAATATGGTTG CAGTACAATGTGTTATGGCTATAAACTAATAATCTTTAGATCTTGTTATTGACACATTATTATGCTTGAGGGGTTAATTA GATGGAAAATTAATGCAAAGTAAGTAATATATGCCATGTTCTCTTATTTTTCTAATGTTAATGCCTTTCTTGTGTGAGGC ACCTTTCACCTCAAGGTGTTAAAATCCACTAGTGCTTTTTGGCTTTCCACATTCAATCTTTAACCAGTTTATGCTATGGT TATATGTTTCTTCCCCTCAAATAGGTAAAAGATATGACCTGGACTTTCAATCTCCTCAAAAGTCAGGACAGAATTTTAAG TCAGCAGAGGATATGATTGAGCTGTACAAGGAACTATGTTCTGGTAAGACAGTTTATCTTACCCCATTTCCTATTAAGTA GGCTATAAATTATTTTGGCTATGCTTCATGTTTATTTTCAATCTTTCTTTCTGAATTTGTAGAATACCCAATTGTATCAA TAGAAGATCCATTTGACAAGGAAGATTGGGAACATATCAAGTATATCTCTAGTCTTGGAATATGTCAGGTATTATTGCTT AAGAAATTAATATTTATTTCAACTCTTGGACTTTGTCGGGTATGATTTCTTATTATTTTGTTTGAGATATTTTGCATTCA TTTTTGGTCCTAGTTGTCACCTTATTGTGGTTGAGGATTAGGAAGGTCATTTGCATGTTACCACTAGTTGATCTATTAAC TACTGATTGGAACTTCTGCTTATATAGTTTCGCTTCTTTTGAATGGTTCTGCAGGTAGTTGGGGATGATCTCTTAATGTC AAATGCAAAACGCATTGAGAGAGCAATAACCGAATCTGCTTGTAATGCTCTTCTTCTGAAGGTAAGTAGGTAACCGAATA TTATTTCAATGAATTTTTAAGGGGTTGGTTGGTCTAATAGTGAATTTAACCTTATATCTCACTTTGTTTTAACTTAGAGA GGTTTTTTGTTTTGAATAATAAATGCTAAATCTAGTTGTTCATGGAATGGAAAAAGTCAGTGTTTCATAGTTAAGTTGAG ACTTTTGATATCTACAGATTTTGGAAAAGGTTGCTTTTTCATGCAAATAAAAGAGAAAGAAATATTAAGTTATAAACATT GTTTGCCTCTTTATTCATGTGCTTTTTCTGTAATTTGGAAGGGTATTTTAATCCTCCTCTTTTGTACGTTCCCTTCTATT TTCTTAGACGAAAAGAAACACTAAAACATGATGGTTTCCCATCGTAATTTAGGTCAACCAAGTTGGGACTGTTACAGAGG TCATTGAAGTGGTGAAGCAGGCAAGGGAAGCGCATTGGGGGGTGGTAATGTCTCATAGATGTGGGGAAACTGTAGATGCT TTCATAGCTGACTTATCTGTTGGCCTTGCTGCTGGTCAGATTAAAGCAGGTGCTCCTTGCAGAGGAGAGCGGTTAGAGAA GTACAACCAGGTCTCTTTCTGATTCTTATGCTGATGCTTTTACTTCACTGTTATAATTATGGCTACTTTTGGTTCATGTA CTTATTGTCATGTCGTATTGCACTTTTGGTCTCTCATCTATCGCGATTTGGGTCTCTGTTGTTTAAAACAAGCGATTTTG GTCCCATAATATTTTATTTGTGGAAATTGGGTACTTTTAGATGAACATCCAAAATGAAACGGAGAGAGCTTATGTCTCTC TTATTAATTAACATGGACGCCAACCGGGGTGCCACGTAGATGCCATGTCACTCTCTTATTCACTTAAATAGTAAAATTAA AATTAAAACATAACTTAAATTACTAATATAGCCCTAAGAGAGAGAGAGAGAGAGAGAGAACCCACCAAAAGCCATAGGCA ATTTCTCTGGCACCCATCTAAAAGTGGAGGGGGTTTCATACATTTTTATAATTTGCAATCTAATCTAATCCTTTACATTA TAAATATAGACTGAAGGGTTCAAAACCCTCCCATTTCTAATGGGTATCGGAGCAACACCAAAATCTAAACCAGACCCACC CCCTCTCTTCATCTTCTTCCCCAACACCAACTAACCTAACTTCCCAAAACATTCCCTACACACAGAAGCCGCACACAGAA AGAGGGTGAGATTGTGATTGTGAGAGAGAAGAGAAAGATAACGAGAGAATGAAAACGGGAGTGGGACGATGATGCGCTTA ACAAGCGCTCCAAGTACGGTGTGAAGTAAGTTTGCGGCGGAGCAGACCTGGCAGCACTGCCTGCGCCGGTGAGGGAGGTT TGAGGCTTTGTTCATCAGAGGTTGCGGTGGGGCTTGAGGACAGGTTGGGTGAATGCTGGTGGTGCTCTGTCATGGACCTG GGTTCGTGGGGCTTCTGGCTCCAACAGGATGGGGTTTGGTTGGTGATTGGGTCTGATGGTGGTTGGCTTGAAGAGAGAGA GAGGGGAGGTGGGGAGGTGGTGCGAAGAAGGGCACGTCAGGTTGTAGGACAGTAGTTGTGGTTTGGTATTGGCTTGGCTC TGGGTTTGTGCTTTCATGTTTATGAAACTAAATTTACTCCTACATACCTATTCCCATTTTTGTTTACTTTGATTCTGGAA TGAAATTTTCTGTTGCTTTGTGTTCTTTTAATGTTTGTAGGATCTTTGTGTTCTTTTAATGTTGGCAGGATCTGTGTTCT TTTCTGTTACTTAGATCTTATGGTGTTGGGGAAGAAGGTGATTATGGAGGATATAGTGTTGAGGAAGAAGATGAAGAAGA GGGGGTGGGGCTGCTAGGTTTGGGATTTTTTTAGGGTTATATTTAGTTATTTAAGTCATGTTTTAATTTTAATTTTATTA TTAATTGATTAAGAGAGTGACATGGCATGTGGTACCCCTCCGTTACATTTTGGATGTCCATCTAACGAAAGGACTTGATT TTTCACAAATTAAAAATTCCAGGACCAAAATCGTTCGTTTTAACAACATTATTAGGGGTTCAAAAATCGCACAATTGAAT AGATGAGATAAAAATGCAATTAAGTCTATTGTCATTTGTCCTCCTCTTAAATTGAAAACAAGGAAAAACATAGTAGTTAC GCTCTGAAATTTGCTGCAGTTACTTCGGATTGAGGAAGAGCTTGGAGATCAAGCAGTTTATGCTGGTGAAGATTGGAGGC AATAA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0010900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTTTACATAAAGTCACTTATTTTCTATGTAATCTTTAGAGAAGCCCTGGATCTTGTAAAGGAGGCCATTAGCAGAAC TGGTTATAATGAGAAAATAAAGATAGCCCTTGATGTCGCTGCTACAAATTTTTGCATAGGTAAAAGATATGACCTGGACT TTCAATCTCCTCAAAAGTCAGGACAGAATTTTAAGTCAGCAGAGGATATGATTGAGCTGTACAAGGAACTATGTTCTGAA TACCCAATTGTATCAATAGAAGATCCATTTGACAAGGAAGATTGGGAACATATCAAGTATATCTCTAGTCTTGGAATATG TCAGGTAGTTGGGGATGATCTCTTAATGTCAAATGCAAAACGCATTGAGAGAGCAATAACCGAATCTGCTTGTAATGCTC TTCTTCTGAAGGTCAACCAAGTTGGGACTGTTACAGAGGTCATTGAAGTGGTGAAGCAGGCAAGGGAAGCGCATTGGGGG GTGGTAATGTCTCATAGATGTGGGGAAACTGTAGATGCTTTCATAGCTGACTTATCTGTTGGCCTTGCTGCTGGTCAGAT TAAAGCAGGTGCTCCTTGCAGAGGAGAGCGGTTAGAGAAGTACAACCAGTTACTTCGGATTGAGGAAGAGCTTGGAGATC AAGCAGTTTATGCTGGTGAAGATTGGAGGCAATAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0010900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFYIKSLIFYVIFREALDLVKEAISRTGYNEKIKIALDVAATNFCIGKRYDLDFQSPQKSGQNFKSAEDMIELYKELCSE YPIVSIEDPFDKEDWEHIKYISSLGICQVVGDDLLMSNAKRIERAITESACNALLLKVNQVGTVTEVIEVVKQAREAHWG VVMSHRCGETVDAFIADLSVGLAAGQIKAGAPCRGERLEKYNQLLRIEEELGDQAVYAGEDWRQ

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SMART	SM01192 View details on SM01192 Search for proteins/transripts with this domain View external data on SM01192	1	224	224	3.1E-89	IPR020810 Show description in modal box View details on IPR020810 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.20.20.120 View details on G3DSA:3.20.20.120 Search for proteins/transripts with this domain View external data on G3DSA:3.20.20.120	10	224	215	7.7E-90	IPR036849 Show description in modal box View details on IPR036849 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR11902:SF39 View details on PTHR11902:SF39 Search for proteins/transripts with this domain View external data on PTHR11902:SF39	13	224	212	1.2E-125	–
PANTHER	PTHR11902 View details on PTHR11902 Search for proteins/transripts with this domain View external data on PTHR11902	13	224	212	1.2E-125	IPR000941 Show description in modal box View details on IPR000941 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00113 View details on PF00113 Search for proteins/transripts with this domain View external data on PF00113	14	223	210	2.1E-86	IPR020810 Show description in modal box View details on IPR020810 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF51604 View details on SSF51604 Search for proteins/transripts with this domain View external data on SSF51604	14	222	209	8.63E-77	IPR036849 Show description in modal box View details on IPR036849 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0000015 View details of GO:0000015 AmiGO InterPro QuickGO	Cellular component	Phosphopyruvate hydratase complex	A multimeric enzyme complex, usually a dimer or an octamer, that catalyzes the conversion of 2-phospho-D-glycerate to phosphoenolpyruvate and water.	Subterm of View details of GO:0044445 View details of GO:1902494
GO:0000287 View details of GO:0000287 AmiGO InterPro QuickGO	Molecular function	Magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.	Subterm of View details of GO:0046872
GO:0004634 View details of GO:0004634 AmiGO InterPro QuickGO	Molecular function	Phosphopyruvate hydratase activity	Catalysis of the reaction: 2-phospho-D-glycerate = phosphoenolpyruvate + H2O.	Subterm of View details of GO:0016836
GO:0006096 View details of GO:0006096 AmiGO InterPro QuickGO	Biological process	Glycolytic process	The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.	Subterm of View details of GO:0006754 View details of GO:0006757 View details of GO:0009166 View details of GO:0016052 View details of GO:0019359 View details of GO:0042866

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0010900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

LotjaGi1g1v0010900.3