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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0014900 |
Transcript ID | LotjaGi1g1v0014900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ER membrane protein complex subunit 8; TAIR: AT5G55940.1 Uncharacterized protein family (UPF0172); Swiss-Prot: sp|Q9FG71|EMC89_ARATH ER membrane protein complex subunit 8/9 homolog; TrEMBL-Plants: tr|I3S6K8|I3S6K8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0014900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1943303..1945661) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAGCGTCGATTTGAGGTACGAGGTTGCACAAAACGCATACATCAAACTCGTCCTTCACTCCCTCAAACACCCCTC CTCCGCCGTCAACGGCATCTTGATCGGCCGCGTCTCCCCTTCCAACGACACCGTCGAGATCACCGATGCCGTTCCTCTCT TCCACTCTCACATCCCTCTTCTCCCTCAATTGGAGATCTCCCTCATTCTGGTCACCCCTCTCTCTCTCTCTCTTCTAGGG TTTTATGCTTTTTTTTTCACACTTTCTCATTCAGTTTTGACCCCAAATTGTTATTTGTGAAATTATGCATAAACTCATAT GCTTTCTTAAATAACATGTTGTTTAATCATCTGGGTATTTCTTTTCTTCTTCTGGGTATCTGTTAATTACTGCTTACTTT GGAATTTGGGTTCTCCTTAGTTTATCATTGTAATTTATGCATAAACACGTAAACTTTGTTAATTAACTTGCAATTTAAGC AACTGGATGGGTAGTTTACTTTGGATTTTCGTTAGCTGATTATCCAAACATTATGCATAGACACATATGCTTTCTTAAGT AACATGAAATTTAATCAATTTCTGTTTGGGTATCAGTTGATGATTGTTTACTTTGGATTCAACTTAATTGACAATTGTAA AATTATGCTAGACACATATAACAGCAATTTAATCAATTTATGTTGGGTATCAATTGATTATAGTTTAATTTCAATTTTCC GTAGTTGATTATTGTAAAACTATGCATGAAGGCTTATGCTTTCATAAATGACATGTAATTTGATCAACCTGGTTCAATTT TTTTTTCCCATGTTGGGTAAAATTTGATTATTGTTTACTTTGGAATCTCTTCAGTTTTCTGATTTTTGTGATCATAACTG TTTGTGGGACAGATAGAGGAATATTTTTCCGCTAAAGGGTTGAACATAGTTGGGTATTTTCACGCGAATGAGAGGTCTGA TGATCACGAGCTCGGTGGTGTGGCAAAGAATATTGGTGACCACATCTGCCGCTACTTCCCCCAAGCTGCTATCCTCTTGG TACGTGTTGGAACTTTTGCTAATCTTTTTCTTATGAATTGTGTCATTCTGCTTACCACCTATTTGTTCCCTTTACAATTC TTCGCAGTTAGATAATAAGAAACTTGAAGGTTTGAAAAAGAGCAAGGAACGCGGTGCTGTGATGCAGGTTAGCAATATTA GAATGGGAAACCGCATTCATCAACTGCTTTAATAATTGGTTATACGAAAACTGTGTTTACCAACTCTATGAATGTTATTT GGATTTCTCTTGATAACACGTTTGATCAAATCATCCAATATAGAGAAAATAGAAATTTGCAAGGGCCTTTATATGAGTGG AATGAAATCAATGGAAACATGAAAACCTTTGTAGTCATTACAATAAGTGTATCTTCTGTAGTCTCCTTTCCCATCCGACT ATGAGCAGTTTGCTTATATATTTTGGTTTCCCCATCTTAGTTTTAGAGCTTATTTTGGTGCCTTATTCTCTAAACCTGGA TAAAATTTCTGTATGGCTTAACTCGATATTAGGGAGTAGCATCTTGAATGTATAGTAGCAGTAAAATCCTGGACTTCAAT CTGATGATGGCAACAATTTAAAATCACAAGGCTTGAATATTTTGCTTAATCCCTCTTCCTGTCTCCAGCAAAAGTTAAAA GATTCCTTGTTTTATTTGCCACATGTTTGCAGCATATCATATCAATCTATCTGATTTGAAGTGAGACAATAAAATGACTG TGGTGTGTGATTGACATGTTATGCTGAATTATAAAGGCTGCAACCACGGGCCAGTATAAGAATTCATCTAAATTTGTACT AATCACAAAGATTTCATGCCTTTTGTTTGTTACTTGTTTTCAGTTTTATGGTGTGTCCAGCATACACTTTCTTGTTGATA AATGAAAAACAAAAACACTAACTTAACGTTTATAAACTTGGTTGTGAGTGCTTATGCTATTATATATGGTTTCCCCATAT GATCTAGAGTGATCTTTTTGCCGGTTACATTAACACCGATTGCCTTTTTCTTATGATTTAGCTTTATCTTAGGGATGCAT CTAAGAACTGGAAGTTGGCTCAGCCAGATGGGAACAGTCGTTTCTCTCTCAAAGAGCCATCAGCAAATCTGGTCTTATCA GACTATATTTCATCTGAGAAATGGAACAACATTGTAGATTTTGATGACCACCTCGATGACATAAGCAAGTAAGTGCTTTT GCCCAACAACATTTCGTGCGTGTTTGGTTTCACCTTTGTGAGCCATAGAATCAATTCTCATTTACCAGAATCACTTTAGG TGGTTGTATAGATGTTTGACAATTGACTTAGAGAATTGA
CDS sequence (LotjaGi1g1v0014900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGCGTCGATTTGAGGTACGAGGTTGCACAAAACGCATACATCAAACTCGTCCTTCACTCCCTCAAACACCCCTC CTCCGCCGTCAACGGCATCTTGATCGGCCGCGTCTCCCCTTCCAACGACACCGTCGAGATCACCGATGCCGTTCCTCTCT TCCACTCTCACATCCCTCTTCTCCCTCAATTGGAGATCTCCCTCATTCTGATAGAGGAATATTTTTCCGCTAAAGGGTTG AACATAGTTGGGTATTTTCACGCGAATGAGAGGTCTGATGATCACGAGCTCGGTGGTGTGGCAAAGAATATTGGTGACCA CATCTGCCGCTACTTCCCCCAAGCTGCTATCCTCTTGTTAGATAATAAGAAACTTGAAGGTTTGAAAAAGAGCAAGGAAC GCGGTGCTGTGATGCAGCTTTATCTTAGGGATGCATCTAAGAACTGGAAGTTGGCTCAGCCAGATGGGAACAGTCGTTTC TCTCTCAAAGAGCCATCAGCAAATCTGGTCTTATCAGACTATATTTCATCTGAGAAATGGAACAACATTGTAGATTTTGA TGACCACCTCGATGACATAAGCAAGTAA
Protein sequence (LotjaGi1g1v0014900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSVDLRYEVAQNAYIKLVLHSLKHPSSAVNGILIGRVSPSNDTVEITDAVPLFHSHIPLLPQLEISLILIEEYFSAKGL NIVGYFHANERSDDHELGGVAKNIGDHICRYFPQAAILLLDNKKLEGLKKSKERGAVMQLYLRDASKNWKLAQPDGNSRF SLKEPSANLVLSDYISSEKWNNIVDFDDHLDDISK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 195 | 192 | 4.0E-87 | – | |
PANTHER | 4 | 195 | 192 | 4.0E-87 | ||
Pfam | 8 | 195 | 188 | 1.4E-56 | ||
ProSiteProfiles | 8 | 142 | 135 | 17.122 | ||
Gene3D | 9 | 95 | 87 | 2.4E-5 | – | |
CDD | 10 | 195 | 186 | 1.33163E-72 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | ER membrane protein complex | A transmembrane protein complex located in the ER that is involved in ER-mitochondrial membrane tethering, which is required to facilitate lipid transfer from the ER to the mitochondrial membrane. In S. cerevisiae, it has six members: EMC1, EMC2, AIM27, EMC4, KRE27, and EMC6. |
Expression pattern of LotjaGi1g1v0014900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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