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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0029000 |
| Transcript ID | LotjaGi1g1v0029000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NEP1-interacting protein 1; TAIR: AT3G20395.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1; TrEMBL-Plants: tr|V7B9L4|V7B9L4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0029000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3462696..3465826) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTAGCCGCATCCATGGACATGGAATGTAAAGATTTTTCTTATAGAAACTTTGCTAACGTGGCTTTTCTCAGCCTAT AAATGCTTCTCTAACTGCATCATTTTCAAGCATTACACTTGCATCATTCCTATCCTCCCAATCTGAAAAAGTCTATTACC TTCAATTCTCTCACAATGACCAAGTGGTTTTCTGGTAAAATAGCAGCAGTTAAAAGGTGTAAGGAAGCTCTTTCTGGCGG TTCTGTAGTTGGGGCATTCATGGTAGCTGTGGAGAGTGTTCTTTTTGCTGCATTTACCTGCATTTTGATCCTAGGTATGA TGCACTTCTCTTATTCTATTTGTTAGTAGCAGATATCACTAAATCACTACACAAGGTCTTTCAAAAACATTGGTATATAA TGTTATACATCTAAAAATCTAGGCATGCAAGTTAGTGTTTGGATGAGTGTTATTAGAACTGATTCCTTATAGAATTGATT ATGATAGAAATTAGTTGAAAGTGAAGTGGTTTTTATGTTTGGATACAATTGATTTTGCAGCTTGCTGGAGTCAATTTTGA AAAGAAACATCCAAACACCAAAAAATTGATTCTGAACACTTGCAAACGTGAAACCAAACATGCTCTAAGTTTAAGGCCTC TCAAAGACTCAAACACTACACTTAATGTCTCAAAGCAACTGAAATTAATGCAAGTTTGATTAAGCTATATATAGTTACAG AAGATGGCTCAGGTAAACAATGAAAGGAACAAACAGAAAAATAAATTGAAGATAAAATAGTGCTTTCCATTAACACTTCA TAGTGTGAAGTCACTTGAAATAGTGTTAAGAGCAATGTTGGATCTTGGTACAGGAGGGTCAATAATAGGAACAATTGCTG GAGCAATCAGAGGCCAGACTACAGAAACTGGTTTTCTTGATGGGGCTGGCAAAGGAGCCATCACAGGGGCAATTGCAGCC ATAGAATTGACAAATTTTGGTGCTGTTGATGAGTCATTTTTCAAGGTATAAATAATACTACTATTCCCATAATTTGGCAA TTTAATGGTTCATCCCTTTTCCTAAGGCCTTGATTAATTCTATTACTAGTAACTAGTGGCTAGTAGCTAGAGTGATTGAT TTTACACTTCTTACCTTGAAGTTTTGCTGTGTTGAATTGCAGGTTGCCCTGTTAAGCAGTTTATTTAATGGGAAAGTCTT TATGGAATTGATATGTCCTACTGTTGCACATGCCTATCAGTTGCATGTAAGTATTTAAAAGCTAACTAAACGTCAAATTA GTGCATGTTTTGCAAGCACTTCTATTTTCTCATAATCAATTTTGATTACCAAAACCTACTCACATAAGTTTTTTCTCAGA ATTAATCTTAACTTTAGAGTTAATTGTATAAGGATTTCCAAACATGCATCATAACTGATTCAAAAGCCAAAATCAACTTC TATTTTCTCATAATCAATTTTTACACTATGGAACTACCCACCGAAGCTTCTTTGCGGCATTTATTTTAACTTCAAAATTA ATTATAGAAGAGTTTTCAAACATGCGTTATATATGAATTCAAAATTCAAAATCAATTTTGCGAAAAAAACTAATGTGAGT AAATTTTAGATGTCAAAATTGATTATGAGAAAAAAAGGCTCATTCAAACATGCACCTATTAGTACTTGGAATCAAACTTG TAATCACATTTTGGTGAAACTCATTTGTTTCAGATCAACACACCAGAAACAGCTTACGGAGGAGTATCTGATATTTATGA TATCAAGGGAGTGAAAGGGATGCCCCAGAACTTCATTCTGAAGCTTCCTTTCCACCGGTTCAACTCCAACAAAATAATGA AACTATGCAATAAATCTTGCTGCTCAATTTGCTTCCAGGTGAGAAAAATAATGTTTTGTTTACCCTTCTTTTTCACCTCA ACCTCAAAGGAATAAGAAAATATCGAAAAAAAGGAAAAAGAGTACAAGAAATGCAGAGAGAAATATAAAAAAAAAATATT GAAAAAAGATATGATACAAGAAAAAGTGGAGTGTGAGTAAATCATTCCTCACGTCACAAACATCATCTCTGATGCGTGTG AAAATTTATTGGTTCAAGGAAAGCAAACAGAAGTTGGTTTGGGGATACCAATAAATCAACTACTTCAAAAAAACTTATGA CGGGGCCACTAAAACTTTGGTTGCAAGAATTGTTTTACTAATATAATATTTGATTAAAATACCTTTTCTTCAAAAAAAAA ATAATAGTTTTAAGTATCTCGCGACCAAACATTATTATGTTTTTTGAATGGAAACATTATTATGTTGTAACATTGTAACA AGTAATTTCAACAAAAAAAATTAAAACAAGTGAAAAAAATATTCTCTATGGTTTGGGTACACACTCTTTTGTAATTTTGT TCATGGTGAAACGTGAATGTAATATGATTGTTTATTTTATGTCAAAACTTGCTTTCTCTTATTTTAATAATGTATGAGTC GAGGAGGGTCCTTTTGATCTAGGTCTGATCTTGTTTGATGATCAATTCCTCTCTTTATGCTTGGTTTGACCGTTAAAAAA GCTAGACATGGAAAACATACATACATTGTTATTTTTTTTCAATTAATTATTATTTTTCTGGAAATCCAAATATATTAATA AAGAGAAAAAAAAACTAAGCTCAGGAATAGGATAATATATGGAGATAATAAAAATAAAAATATCCAACCATCGAGAACCA TAAGATAACTACAATAGTCGTATCACATAATTGTTTCATTTACATGTCCTTAGATAGTATGAAAATATTAATTCTTCACG CAATATCAATGAAGTCATCTTATACAACTAAACTAACTCCATGGTCTTACATTTTGATTTGCAGGATTTTGAGGATGAAG AGCTAGTCAGAATACTTCCTAAATGTGGCCACATTTTTCATTTAGAATGTATAGATAAGTGGTTAGTCCAACAAGGATCA TGTCCCATGTGTAGAACTTTTGTTTCTGATTACCATATTCATGAATAATAGCGTTTTTGTCATTTATTTGTGAACACGTA AGACATTTTTTGTGCAAAGAAAAGAAAAATTTAAGGCAAAAGAAAAAATTGCTACAATACTCGTCTCTCCTTTTGTAAGT TTTAACCATCA
CDS sequence (LotjaGi1g1v0029000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCAAGTGGTTTTCTGGTAAAATAGCAGCAGTTAAAAGGTGTAAGGAAGCTCTTTCTGGCGGTTCTGTAGTTGGGGC ATTCATGGTAGCTGTGGAGAGTGTTCTTTTTGCTGCATTTACCTGCATTTTGATCCTAGGAGGGTCAATAATAGGAACAA TTGCTGGAGCAATCAGAGGCCAGACTACAGAAACTGGTTTTCTTGATGGGGCTGGCAAAGGAGCCATCACAGGGGCAATT GCAGCCATAGAATTGACAAATTTTGGTGCTGTTGATGAGTCATTTTTCAAGGTTGCCCTGTTAAGCAGTTTATTTAATGG GAAAGTCTTTATGGAATTGATATGTCCTACTGTTGCACATGCCTATCAGTTGCATATCAACACACCAGAAACAGCTTACG GAGGAGTATCTGATATTTATGATATCAAGGGAGTGAAAGGGATGCCCCAGAACTTCATTCTGAAGCTTCCTTTCCACCGG TTCAACTCCAACAAAATAATGAAACTATGCAATAAATCTTGCTGCTCAATTTGCTTCCAGGTGAGAAAAATAATGTTTTG TTTACCCTTCTTTTTCACCTCAACCTCAAAGGAATAA
Protein sequence (LotjaGi1g1v0029000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKWFSGKIAAVKRCKEALSGGSVVGAFMVAVESVLFAAFTCILILGGSIIGTIAGAIRGQTTETGFLDGAGKGAITGAI AAIELTNFGAVDESFFKVALLSSLFNGKVFMELICPTVAHAYQLHINTPETAYGGVSDIYDIKGVKGMPQNFILKLPFHR FNSNKIMKLCNKSCCSICFQVRKIMFCLPFFFTSTSKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 34 | 34 | - | – | |
| PANTHER | 18 | 179 | 162 | 1.4E-62 | – | |
| PANTHER | 18 | 179 | 162 | 1.4E-62 | – | |
| Phobius | 35 | 58 | 24 | - | – | |
| TMHMM | 36 | 58 | 23 | - | – | |
| Phobius | 59 | 198 | 140 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0029000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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