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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0046300 |
| Transcript ID | LotjaGi1g1v0046300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 56; TAIR: AT4G19645.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; Swiss-Prot: sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B; TrEMBL-Plants: tr|G7K374|G7K374_MEDTR TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain protein; Found in the gene: LotjaGi1g1v0046300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6327259..6329592) extracted from Lotus japonicus Gifu genome v1.2.
ATTATGAAATTCAAATCATACCAGAACCAGGCTAATTTGTTCGTGAAGGAATATTTGTTAGCAGACCCTCTAATTCCATA TACTTCCATTGTTGGTGGCATTTTTGCTTGCAAGATGGTATGTTGTATTATATTATGTTTTTATTCTATTTTCTCTAGTA TTTCACCAAAGAGAAATTAAGATTTTCCAATCTTACATTTATATCTAAATATTCCCTGTTTTTTAGGTCTATGATCTTAC TCAGCTTTTTAGCACTATTCACTTTAAGAGCTATTCTAGCCTCACTAAAATCCAACGTATTGAGTGGAATAACCGGTCAG TGGATGTTTTCATTTAGTGGAAAATCTGTTCTTCTGTTTATGATACTGTAATGTTTATGAACTTTTTCTATCTTTTGTGC AGTGCTATATCAACTATACATGCCATTTTTATAACAACTATGTCATTGTACTTCGTGTTCTGCTCAAATTTATATTCTGA CAGCGAGTCGGCTGAACTAATTACGGTTCGAAGCTCTTCATTGTCTACATTTGCTCTGGGGGTAAGAATGATCTGGATTC TGAACTTGTCAATTTCTTTGCTTATTCTTACCCTCTTTGTGATTTATCTCTGCAAGTCGCAATTATGAGAATCAATAATT ACATATAAGAGTAGGGCATTTCAATAAATCAAATTCATCTAACTTTTAGAATCTGGAGATAGAATTCATTGTATATTGGT CTATGACTCTACGCCAAGTAGGGTTAGACATAATTAGCAATTGCATCATAGCATGTCGTACTAACTTTTTGTCATTGTGT TTTTTGATATCATTATGACTGACTTGATGTAGTGTGGTTTCAAAAAACTGAGTTAATATGCTAGTTCAGACATTTTCTTG GAGATTTTGGCGCGCCTTTTATATCTTGACATTTTCATGATGGAGATACGATAAATTGACCGTGAAACACTACACATTCT AGAAGTTAAATTGGGAGGACACCCATGCCTTGTTATATGAAAGCAAAGGGGACTAGTTGAAAGCATGGATGCCACGTTAA AATCAAAATAACATTTTAAAGAAACTTTTGGTATGCGATAAGCTAAAAAATAATGCTAACATGCATGCAGTATAGGATAG CCTTTTATGGTACATCAAGTGATTACAGAATCCAGCAGAGATTTAACATATTAGGAATATTTCTAACAAAGAAGACATAA AGCAGAATTTTTGTATAATAATCAATTATCTGAACACACAAGATTTTATCTGCTTCAGGAGACTGGTCATGAAATGCTAT TTTCCTTAAGCTGCATTTTCAAAATATATTTTCCAGCTGAAAGTTTGCTCAAAAAAGAAAAACAGGGTAGTAATCCCATA TGTTCTACATGGTTCACCTTGTAAACTTTAAAGAAGGCTGCAAATGCTCTTCGCGCCTATATATTTCTTGGAGTTTCTGT TAAATAACTCGAGTTTTCTATCTGGTCATGATTTCTGTATTCCTCACATTTTAATTTTACATTGACAGGTTTCTGTTGGT TACTTCATTGCTGACCTTGCGATGATATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTATGTAAGGATCATATCTTT TGACTTGCATAGTTTAAACTTTAGACCAACCTGTCTGATTAAGCTGAACTCTCTTATTCAGTTTTAAGACATTTCACTTG ATAGGAACCCAGCTTGAGATGATTATGGCCAGAATTTGGCTTCTTCCTTTTTCTCCCTTTTGTCCTTCTGCGTCAGGATT TAACGTGACTTCATATTAACATTGATTCAGGTGATTCACCATCTATTTTCTTTAGTAGCAGTAGCCTATTCAATGTTGAG CGGGGAGGGGCAGCTATACACATATATGGTACTGATCTCTGAGACAACAACTCCCGGGATCAATTTAAGATGGTAATCTT GCACTTAAATTTTCTCTGAATATAGCATGTAATTTGTTTCTATGTTAATGTATTTATTTTGTTTTTGAAGGTATCTTGAT GCAGCTGGAATGAAAAGGTCAAAAGCTTATCTCATCAATGGGGTTGTAATATTCATCGCTTGGCTGGTGGGTCAAGTCAT TGCAGTTTGAATTATATCCCTGTAAATTATGTATCATGTTATTTGTAGAACCACTGTAAAGAACATATCATGTTTATATA TAGTCCCATTCCTGCCTTCTTGGATGTGCTTACTGAAATGTTCTTTCTATCTGCAGGTTGCGAGAATACTTTTGTTCGTT TACATGTTTTGCCATGCTTACTTGCACTTTGATCAGGTAATAACTACCAACACACTGAATTGAAGAATTGTCTGGTGTGT GGTGCTTTTTATAG
CDS sequence (LotjaGi1g1v0046300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATTCAAATCATACCAGAACCAGGCTAATTTGTTCGTGAAGGAATATTTGTTAGCAGACCCTCTAATTCCATATAC TTCCATTGTTGGTGGCATTTTTGCTTGCAAGATGGTCTATGATCTTACTCAGCTTTTTAGCACTATTCACTTTAAGAGCT ATTCTAGCCTCACTAAAATCCAACGTATTGAGTGGAATAACCGTGCTATATCAACTATACATGCCATTTTTATAACAACT ATGTCATTGTACTTCGTGTTCTGCTCAAATTTATATTCTGACAGCGAGTCGGCTGAACTAATTACGGTTCGAAGCTCTTC ATTGTCTACATTTGCTCTGGGGGTTTCTGTTGGTTACTTCATTGCTGACCTTGCGATGATATTTTGGTTTTTTCCTTCTC TTGGTGGATATGAGTATGTGATTCACCATCTATTTTCTTTAGTAGCAGTAGCCTATTCAATGTTGAGCGGGGAGGGGCAG CTATACACATATATGGTACTGATCTCTGAGACAACAACTCCCGGGATCAATTTAAGATGGTATCTTGATGCAGCTGGAAT GAAAAGGTCAAAAGCTTATCTCATCAATGGGGTTGTAATATTCATCGCTTGGCTGGTTGCGAGAATACTTTTGTTCGTTT ACATGTTTTGCCATGCTTACTTGCACTTTGATCAGGTAATAACTACCAACACACTGAATTGA
Protein sequence (LotjaGi1g1v0046300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFKSYQNQANLFVKEYLLADPLIPYTSIVGGIFACKMVYDLTQLFSTIHFKSYSSLTKIQRIEWNNRAISTIHAIFITT MSLYFVFCSNLYSDSESAELITVRSSSLSTFALGVSVGYFIADLAMIFWFFPSLGGYEYVIHHLFSLVAVAYSMLSGEGQ LYTYMVLISETTTPGINLRWYLDAAGMKRSKAYLINGVVIFIAWLVARILLFVYMFCHAYLHFDQVITTNTLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 68 | 68 | - | – | |
| PANTHER | 1 | 230 | 230 | 2.4E-135 | – | |
| PANTHER | 1 | 230 | 230 | 2.4E-135 | – | |
| ProSiteProfiles | 60 | 233 | 174 | 29.121 | ||
| SMART | 60 | 228 | 169 | 1.2E-18 | ||
| Pfam | 64 | 225 | 162 | 1.4E-26 | ||
| TMHMM | 65 | 87 | 23 | - | – | |
| Phobius | 69 | 87 | 19 | - | – | |
| Phobius | 88 | 106 | 19 | - | – | |
| Phobius | 107 | 130 | 24 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 131 | 136 | 6 | - | – | |
| Phobius | 137 | 155 | 19 | - | – | |
| TMHMM | 139 | 156 | 18 | - | – | |
| Phobius | 156 | 160 | 5 | - | – | |
| TMHMM | 160 | 182 | 23 | - | – | |
| Phobius | 161 | 182 | 22 | - | – | |
| Phobius | 183 | 193 | 11 | - | – | |
| TMHMM | 194 | 216 | 23 | - | – | |
| Phobius | 194 | 216 | 23 | - | – | |
| Phobius | 217 | 233 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0046300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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