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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0050600 |
| Transcript ID | LotjaGi1g1v0050600.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rho GTPase-activating protein; TAIR: AT5G19390.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|G7K336|G7K336_MEDTR GTPase-activator protein for Rho-like GTPase family protein; Found in the gene: LotjaGi1g1v0050600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7223393..7224846) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATTCCAAGGTTCTTGCATATTCTTTTGAAATTTGCTTTTCTTTTGATTGCTTTCGTAGTACACATAATCTTACAAA AAAATTGCCTGTGTGAAGACTAAGGCTGAGCTGGAGGAAATTGCACTTGCTGAAGCTGATGTGGCCAGGTTGAAGCAGAA GGTTGCAGAGCTGCACCATCAACTTAATCAGCAACGACAGCATCACTATGGTTCACTTACCGATGTGGGTGATCGGTACC AACATGCCCAAAATCAACCTCAGCCGTGAGTATACAGACATGTGTTATCTTTAGGCATTGCTTAGATTATCATGCTGAAC CTTGCAAGTCATCAAACAACTTTTAATCCTAGGTATTCTCATAATGTTGAAAAAAATAGAAAGAAAGAAAAGGAATACAT GCATTAGGTCTCCAGAGTGTATATTGTTATTACTGTTTTTGAGGAACTTTAAGTTGTGCAGTTCATTAATTTGACAACTA GTCCAGTTTATATGTCAAAGAGTTTACTGGTTTAGTGGATGCAATGTGAATGGACTTTTATCAGTCTCGTTCACTTTTTG TCTCGAAGTAAGTTGCTAACACTCGTGTGCACGGGTGCCAACGAGTATCCAACTTCAAACACAGCCTTAGTACCTACTTC AAAGTGTTATAGTCACTACCATTGATATTAAGTATATTCCAGTTGTCATCCAATAATTTTTCCTGAAAAAGAGAAAACAT GTTGTAATCTTATAGTTCTCTGTGTTTCTTCGGTTCCTTATCGAGGAATTCTTGGTATGCACTTTGTGCTTGGACTCATT TTAAATTTTTAACCAACATTTGTGATTACTGGAACTGAACACTTGTCTTATGATATATTTTATTCACCTTTATGAGACCT CCCTCTTAATTGAAAAACCTTTTGAAATTATTAAGTTCGATAGTAGCTATAATAAAATTTATCCGACTTCTGCAGGAGAT TTCTTCAGCAAGATTTTGATTCAACCCTTGCGTTTTGTAATCATGAAAGGAAGCAAAGGACTGAGGTATGTTTTTTAGTC AACATGTCTTACTCACTAACTAACTAACTATTATTCTGTTAACTGACTAATTCTTATTAGCTGACTGTACCTATCAGAAT AGTCCGGTGCTTGTGGATGATCTATTCTTAATGGTTATGACTTGTGAGCGCTTTTTCATCAATAACTCATGTAAAATTTG CCTTTTCATTTCAACAGGAGAGTGTATTGGGCACTGATTGGAGAAACATCAAAGGACAAATATTGGCATCTGGTAATGGT AGTAGGCAGCCTTCTCGCAAGCAATTTATAGATTCAAGTCCTAGCGATTCGAAGAGTACTGAAGCATCAACAAGCATGTC AGTGGATGAGCTTGGTGTTGTTGATTCTGCAGCCTCGGTGCCCTCCACCTCAAGAGCTGCAGAGGTAAGAATTCAAGAAA TGTGCTTTGCATAG
CDS sequence (LotjaGi1g1v0050600.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCCAAGACTAAGGCTGAGCTGGAGGAAATTGCACTTGCTGAAGCTGATGTGGCCAGGTTGAAGCAGAAGGTTGC AGAGCTGCACCATCAACTTAATCAGCAACGACAGCATCACTATGGTTCACTTACCGATGTGGGTGATCGGTACCAACATG CCCAAAATCAACCTCAGCCCGATTCGAAGAGTACTGAAGCATCAACAAGCATGTCAGTGGATGAGCTTGGTGTTGTTGAT TCTGCAGCCTCGGTGCCCTCCACCTCAAGAGCTGCAGAGGTAAGAATTCAAGAAATGTGCTTTGCATAG
Protein sequence (LotjaGi1g1v0050600.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSKTKAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLTDVGDRYQHAQNQPQPDSKSTEASTSMSVDELGVVD SAASVPSTSRAAEVRIQEMCFA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 57 | 57 | 6.3E-33 | – | |
| PANTHER | 1 | 57 | 57 | 6.3E-33 | – | |
| Pfam | 1 | 36 | 36 | 2.3E-8 | ||
| Coils | 5 | 39 | 35 | - | – | |
| MobiDBLite | 33 | 74 | 42 | - | – | |
| MobiDBLite | 49 | 74 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0050600.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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