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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR025757
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 40 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.564s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0046779.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508699461|gb|EOX91357.1| chr0 15544918 15545972 -
2 domain predictions
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Lj0g3v0207199.1
n.a. Hypothetical protein [Oryza sativa Japonica Group] gi|20330763|gb|AAM19126.1|AC103891_6 chr0 103455428 103457710 -
2 domain predictions
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Lj2g3v1828550.1
n.a. Uncharacterized protein isoform 3 [Theobroma cacao] gi|508705333|gb|EOX97229.1| chr2 27504670 27509663 +
2 domain predictions
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Lj2g3v1828550.2
n.a. Uncharacterized protein isoform 3 [Theobroma cacao] gi|508705333|gb|EOX97229.1| chr2 27504670 27509663 +
2 domain predictions
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Lj2g3v2001540.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508777050|gb|EOY24306.1| chr2 29951922 29959412 +
2 domain predictions
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Lj2g3v2001540.2
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508777050|gb|EOY24306.1| chr2 29951922 29959412 +
2 domain predictions
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Lj2g3v2586650.1
n.a. At3g12540-like protein [Boechera stricta] gi|82749768|gb|ABB89771.1| chr2 35454014 35456714 +
2 domain predictions
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Lj2g3v2586650.2
n.a. At3g12540-like protein [Boechera stricta] gi|82749768|gb|ABB89771.1| chr2 35454014 35456880 +
2 domain predictions
 –
Lj2g3v3022930.2
n.a. PREDICTED: platelet binding protein GspB-like isoform X2 [Cicer arietinum] gi|502098404|ref|XP_004491227.1| chr2 39102194 39113823 +
2 domain predictions
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Lj3g3v2721430.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508699461|gb|EOX91357.1| chr3 33414486 33417588 -
2 domain predictions
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Lj3g3v3082340.1
n.a. Uncharacterized protein TCM_042103 [Theobroma cacao] gi|508787166|gb|EOY34422.1| chr3 38489241 38494685 +
2 domain predictions
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Lj3g3v3338210.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508705331|gb|EOX97227.1| chr3 40847066 40850557 -
2 domain predictions
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Lj3g3v3338210.2
n.a. Uncharacterized protein isoform 3 [Theobroma cacao] gi|508705333|gb|EOX97229.1| chr3 40847066 40852020 -
2 domain predictions
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LotjaGi1g1v0050600.1
n.a. Rho GTPase-activating protein; TAIR: AT5G19390.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|A0A1J7HR12|A0A1J7HR12_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050600 LjG1.1_chr1 7221625 7235220 -
2 domain predictions
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LotjaGi1g1v0050600.2
n.a. Rho GTPase-activating protein; TAIR: AT5G19390.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|A0A1J7HR12|A0A1J7HR12_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050600 LjG1.1_chr1 7222791 7233711 -
2 domain predictions
 –
LotjaGi1g1v0050600.3
n.a. Rho GTPase-activating protein; TAIR: AT5G19390.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|A0A1J7HR12|A0A1J7HR12_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050600 LjG1.1_chr1 7222791 7233711 -
2 domain predictions
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LotjaGi1g1v0050600.4
n.a. Rho GTPase-activating protein; TAIR: AT5G19390.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|A0A1J7HR12|A0A1J7HR12_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050600 LjG1.1_chr1 7222791 7233768 -
2 domain predictions
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LotjaGi1g1v0050600.5
n.a. Rho GTPase-activating protein; TAIR: AT5G19390.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|A0A1J7HR12|A0A1J7HR12_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050600 LjG1.1_chr1 7222791 7233768 -
2 domain predictions
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LotjaGi1g1v0050600.6
n.a. Rho GTPase-activating protein; TAIR: AT5G19390.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|G7K336|G7K336_MEDTR GTPase-activator protein for Rho-like GTPase family protein; Found in the gene: LotjaGi1g1v0050600 LjG1.1_chr1 7223393 7224846 -
2 domain predictions
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LotjaGi1g1v0090600_LC.3
n.a. ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547); TAIR: AT2G39690.1 ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547); Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|A0A1J7IMB0|A0A1J7IMB0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0090600_LC LjG1.1_chr1 13202640 13206005 -
2 domain predictions
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LotjaGi1g1v0348300.1
n.a. Rho GTPase-activating protein; TAIR: AT4G24580.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|F4JQZ3|REN1_ARATH Rho GTPase-activating protein REN1; TrEMBL-Plants: tr|K7KU55|K7KU55_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0348300 LjG1.1_chr1 81706471 81715769 -
2 domain predictions
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LotjaGi1g1v0348300.2
n.a. Rho GTPase-activating protein; TAIR: AT4G24580.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|F4JQZ3|REN1_ARATH Rho GTPase-activating protein REN1; TrEMBL-Plants: tr|K7KU56|K7KU56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0348300 LjG1.1_chr1 81706534 81715886 -
2 domain predictions
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LotjaGi2g1v0395900.1
n.a. electron transporter, putative (Protein of unknown function, DUF547); TAIR: AT5G66600.1 electron transporter, putative (Protein of unknown function, DUF547); Swiss-Prot: sp|Q4FUU5|RLMD_PSYA2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; TrEMBL-Plants: tr|K7LNB0|K7LNB0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0395900 LjG1.1_chr2 89357727 89362900 +
2 domain predictions
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LotjaGi2g1v0399400_LC.1
n.a. transcription factor, putative (Protein of unknown function, DUF547); TAIR: AT4G37080.2 ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547); Swiss-Prot: sp|Q8R455|TRPM8_RAT Transient receptor potential cation channel subfamily M member 8; TrEMBL-Plants: tr|K7KNT5|K7KNT5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0399400_LC LjG1.1_chr2 89641332 89644690 -
2 domain predictions
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LotjaGi2g1v0399400_LC.2
n.a. transcription factor, putative (Protein of unknown function, DUF547); TAIR: AT4G37080.1 ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547); Swiss-Prot: sp|Q08DX0|SNX29_BOVIN Sorting nexin-29; TrEMBL-Plants: tr|A0A0L9THC8|A0A0L9THC8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0399400_LC LjG1.1_chr2 89641428 89644224 -
2 domain predictions
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LotjaGi2g1v0399400_LC.3
n.a. transcription factor, putative (Protein of unknown function, DUF547); TAIR: AT4G37080.1 ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547); Swiss-Prot: sp|Q8R455|TRPM8_RAT Transient receptor potential cation channel subfamily M member 8; TrEMBL-Plants: tr|K7KNT6|K7KNT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0399400_LC LjG1.1_chr2 89641485 89644620 -
2 domain predictions
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LotjaGi2g1v0422100.1
n.a. electron transporter, putative (Protein of unknown function, DUF547); TAIR: AT5G47380.5 electron transporter, putative (Protein of unknown function, DUF547); Swiss-Prot: sp|Q9FY49|LKHA4_ARATH Leukotriene A-4 hydrolase homolog; TrEMBL-Plants: tr|G7JXC4|G7JXC4_MEDTR Electron transporter, putative; Found in the gene: LotjaGi2g1v0422100 LjG1.1_chr2 92018183 92025853 +
2 domain predictions
 –
LotjaGi2g1v0422100.2
n.a. electron transporter, putative (Protein of unknown function, DUF547); TAIR: AT5G47380.5 electron transporter, putative (Protein of unknown function, DUF547); Swiss-Prot: sp|Q9FY49|LKHA4_ARATH Leukotriene A-4 hydrolase homolog; TrEMBL-Plants: tr|G7JXC4|G7JXC4_MEDTR Electron transporter, putative; Found in the gene: LotjaGi2g1v0422100 LjG1.1_chr2 92018200 92025936 +
2 domain predictions
 –
LotjaGi2g1v0422100.3
n.a. electron transporter, putative (Protein of unknown function, DUF547); TAIR: AT5G47380.1 electron transporter, putative (Protein of unknown function, DUF547); Swiss-Prot: sp|B2USM0|QUEA_HELPS S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TrEMBL-Plants: tr|G7JXC4|G7JXC4_MEDTR Electron transporter, putative; Found in the gene: LotjaGi2g1v0422100 LjG1.1_chr2 92020008 92025502 +
2 domain predictions
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LotjaGi3g1v0488600.1
n.a. electron protein, putative (Protein of unknown function, DUF547); TAIR: AT5G60720.1 electron transporter, putative (Protein of unknown function, DUF547); Swiss-Prot: sp|F4JQZ3|REN1_ARATH Rho GTPase-activating protein REN1; TrEMBL-Plants: tr|K7LQD4|K7LQD4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0488600 LjG1.1_chr3 90639520 90645684 +
2 domain predictions
 –
LotjaGi3g1v0488600.2
n.a. electron protein, putative (Protein of unknown function, DUF547); TAIR: AT5G60720.1 electron transporter, putative (Protein of unknown function, DUF547); Swiss-Prot: sp|F8S101|PLB_CROAD Phospholipase B; TrEMBL-Plants: tr|A0A151R4U0|A0A151R4U0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0488600 LjG1.1_chr3 90641513 90645057 +
2 domain predictions
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LotjaGi3g1v0504900.1
n.a. ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547); TAIR: AT5G66600.1 electron transporter, putative (Protein of unknown function, DUF547); Swiss-Prot: sp|P97675|ENPP3_RAT Ectonucleotide pyrophosphatase/phosphodiesterase family member 3; TrEMBL-Plants: tr|K7LT13|K7LT13_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0504900 LjG1.1_chr3 92257028 92262380 -
2 domain predictions
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LotjaGi4g1v0106900.1
n.a. transcription factor, putative (Protein of unknown function, DUF547); TAIR: AT4G37080.2 ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547); Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|K7MM81|K7MM81_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0106900 LjG1.1_chr4 14981412 14987043 +
2 domain predictions
 –
LotjaGi4g1v0106900.2
n.a. transcription factor, putative (Protein of unknown function, DUF547); TAIR: AT4G37080.2 ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547); Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|A0A0B2NZR9|A0A0B2NZR9_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0106900 LjG1.1_chr4 14982110 14986512 +
2 domain predictions
 –
LotjaGi4g1v0106900.3
n.a. transcription factor, putative (Protein of unknown function, DUF547); TAIR: AT4G37080.2 ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547); Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|A0A0B2NZR9|A0A0B2NZR9_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0106900 LjG1.1_chr4 14982242 14986512 +
2 domain predictions
 –
LotjaGi4g1v0113500.2
n.a. electron transporter, putative (Protein of unknown function, DUF547); TAIR: AT5G66600.1 electron transporter, putative (Protein of unknown function, DUF547); Swiss-Prot: sp|Q8V736|POLG_CACV4 Genome polyprotein; TrEMBL-Plants: tr|K7MHC7|K7MHC7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0113500 LjG1.1_chr4 16355596 16360728 -
2 domain predictions
 –
LotjaGi5g1v0023800.1
n.a. transcription factor, putative (Protein of unknown function, DUF547); TAIR: AT5G42690.2 transcription factor, putative (Protein of unknown function, DUF547); Swiss-Prot: sp|Q9FMP8|RGAP6_ARATH Rho GTPase-activating protein 6; TrEMBL-Plants: tr|A0A0R0FI12|A0A0R0FI12_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0023800 LjG1.1_chr5 4179925 4184889 -
2 domain predictions
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LotjaGi5g1v0023800.2
n.a. transcription factor, putative (Protein of unknown function, DUF547); TAIR: AT5G42690.2 transcription factor, putative (Protein of unknown function, DUF547); Swiss-Prot: sp|Q9FMP8|RGAP6_ARATH Rho GTPase-activating protein 6; TrEMBL-Plants: tr|A0A0R0FI12|A0A0R0FI12_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0023800 LjG1.1_chr5 4180322 4183903 -
2 domain predictions
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LotjaGi6g1v0116400_LC.2
n.a. transcription factor, putative (Protein of unknown function, DUF547); TAIR: AT4G37080.1 ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547); Swiss-Prot: sp|Q3AL08|GLO2_SYNSC Hydroxyacylglutathione hydrolase; TrEMBL-Plants: tr|K7KNT4|K7KNT4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0116400_LC LjG1.1_chr6 29359825 29367801 +
2 domain predictions
 –
LotjaGi6g1v0116400_LC.5
n.a. transcription factor, putative (Protein of unknown function, DUF547); TAIR: AT4G37080.1 ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547); Swiss-Prot: sp|Q3AL08|GLO2_SYNSC Hydroxyacylglutathione hydrolase; TrEMBL-Plants: tr|K7KNT4|K7KNT4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0116400_LC LjG1.1_chr6 29359932 29367484 +
2 domain predictions
 –