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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0060100 |
| Transcript ID | LotjaGi1g1v0060100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histidine kinase; TAIR: AT2G47430.1 Signal transduction histidine kinase; Swiss-Prot: sp|O22267|CKI1_ARATH Histidine kinase CKI1; TrEMBL-Plants: tr|V7BJF4|V7BJF4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0060100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:8369467..8372762) extracted from Lotus japonicus Gifu genome v1.2.
TGATTATGTTTCAGGTGTATGTTTTGGCTATCCCACAAAATGGATTTCTCAGCTTTGATCTAAACTACCAGAAAAAGGGG TTGACACTGTTGATTGTTATGATGGTCATGACATTTGTGGCTATCTTTAGTTTTCTATTCATAAATGTTAAAACCACAAG GCGAGAAATGCATTTGTGTGCCTTACTCATCAAACATATGGAAGCCACTCAACAAGCTGAACGAAAGAATATGAATAAAA GCCTTGCTTTTGCTAGTGTCAGCCATGATGTTCGCACTTCTCTTGCAGGCCTTACTGGTTTGATAGAAATGTCTAATGAG TTAGCTGACCATGGTTCAGAATTGGAGACTAATCTAAAACAAATGCAGGATTGTACCCAAGACTTACTAGGTAACTTCAT TGTACCTAAATTTTATGTGATTATATCATAACATAAAATTCTGATGTGGATCTAACATTCGCGTGTATATGAAAACTTCA TATTGGGACAAATTCGATTCTCACAGAATCATTAAGTGTGTGTTTGGTTCTCTGTTAGGTACATGTCTCTACATGGATTG AAATGAATATATGCTTGCAAAGCCTAACTTGTTTTCTTTGTGTACAATTTTGTTTAGGACTATTAAACTCTACACTTGAT GCAAGCAAAATTGAGTCGGGAAAAATGCAACTTGAGGAAGAGGAATTTGATATATTCCATCTCCTTGAAGATGTCGTTGA TTTATACCATCCTGTGGCCATGAAGAAAGGTGTAGATCTTATATTTGACCCTTGTGATGGTTCAATCATCAAATATTCAC AAGTGAAAGGTGACAAGGGAAAGCTTAAGCAAGTTTTGTGTAATTTACTGAGCAACGCTGTCAAATTTACTGATGGAGGG CACATAACAGTTCGGGCATGGGCTCTGAAGCCAACATTAGAGAGCTCAATGATCAAGACTAATCAATATAGTGTCACAAA ACGTTTATCATGGTTATTTAATAAGAAAAATGAAGCACATGAGGACCTTGAAGCAGCCATGAATTCAACCCAACAAGATT TGAATTATATGGATTTTATGTTTGAAGTGGATGATACAGGAAAAGGAATTCCCAAGGAGAACTACAAGTCTGTGTTTGAG AATTATGTTCAAGTCAAATATACTCAGGGAGGAACCGGGTTAGGACTTGGGATTGTGCAGTCTTTGGTAGGTATTACTTA CTAGTCATTCCCAAGTACTTGTGAGTTTTTCTTTCATTGAGCCACATATTCTCTTGATAAAAATCTTATTTGATTTTCTT TAGGTGCGTTTGATGCACGGAGATATTGGAATTATGGACAAGGATATTGGAGAAAAAGGAACGTGTTTCAGGTTCAATGT GCTCCTCACATTATTTGAGAGTGAGACAGTGAACGATGCTAGCGCAAGGGAATATCTTCAGCAAGGATCAGGTGACAAGA CCCAAGCTTCAGTGAGAACCATTCATACTACTAGTTCTGCTTCAAGCATCTTTTCTGTGAGTCCCAGGTTACATATGTGC AGCTCTAGTCCTAGGCCTGAGGCTTCCCGTGTTGTTCTTTTGATTGGAGACGAGGAGCGCCGAAGGACTTGTCAGAGGTT CATGGAAAGCTTAGGGATTAAAGTCAAGGTTGTGAAGAATTGGAAAAATCTCTCTAATACTCTCGAGAAGATCAAACAGA AGTGTTACCGTTATAATGGCCAAAGTTCTTCAGATTCTTCCAGTTTGAGTTCTCGGTCCACACCTCATAATTCTTCTGCT AAAGCTAGAGGAGTTCCTTTGAGTTCTATGGATGGAATTGAGTATTTACCTTCAGTGTTCAAGAAGACAGAAATTGGAGT TGCCCCGGGTTTCATCTTGATTGTCATTGATGCAAATGCAGGACCATTTTCTGAATTTGATATGATTGTATCCAACTTCA AGAAAAACATTTCCAACCCTTGTAAGGTTGTTTGGTTGGATAAACCACTTATGCGTAGTATCAACCTCGAAACACACAAT CAAGATGACATCATATCCAAACCGTTTCATGGTAGTCGTTTATTCCAAGTTATAAAGCTTCTTCCTGAGTATGGTGGTAC ATGGAAAACAAATTTAAGTAAAGCTCAGAGAGAAAGAACTCCTGATATAGCTGGAAGTACTTGTAGTAGAGACTCAAGTT TATCAAGATACCACTCTCCTCAGTTGATGGACAGATCACAAGTATCTCCACCTGATGAAAGTCCATGTCCAAGTGTTGAA CAAGTTTGCAAAGGAACTCAGAAATCCTATGGTGGAAAGTCTATTGTTAATCAAGGAGAAATGCAAGAGTGTGGAGACTC AAGCAACGATAACCAGCCTTTAAGGGGCAAGAAATTTTTGGTTGTTGAGGACACTAAAGCGTTAAGACATTTAGCTTTGT TTAAATTGAAGTCCCTTGGTGCAGCTACAGAGGAATGTGACAATGGTGAAAAGGCAGTGCAGCTAGTTAAGAAAGGTCTA GCCAAACCTCCCTATGATTGCATCTTAATGGACTGTCAGGTAACGACTACGGTTCCCACTCCTCTCATTTTGTTATCTTA TGACTTATGCGGTTTCCATTCTCCACCATATGTATGATATGCTCATCAATTTTATTTCAGCTAGCAAGTTGGACTGAATG TTGACATTATTACACAGAACTTCTTCTTTCATTTCTATATGCTTTTACCAAATGCTAGATCCACTGTCTACCTATTTGTT TCTTAAGTTGAATGAGTCATTCAAGATTTATTGAAGGTTAAATTCATAATCAATGTTTAGAAGTCTATGAAATATAACTC TGTCAATAATAATTCATAACCTGACTACAAGTCACCATAGAATATATTGATAATACAGATTTTAAAAGAAATAATTGAAT TTTCGATCAATATAATATGTGATTTAATTTTCTATATAATGAATTCAACAGATGCCAGTGATGGATGGGTTTGAGGCAAC AAGACAGATACGAGAGATGGAGAAGACCTATAGTGTTCACATTCCGATTATTGCATTATCTGCTGACAAAATAACGACAG AGACTGGAATGGACTTTCATTTAGTTAAGCCCTTTGATAGAGAGGATTTAATTGAAGCCATCAGATACATACAGAGAAAG GAGTTATGTGCATCTTAGAGTTAAGAGGCTATGGCTTTTGGACCTTGTATTGGAGGAAAACATGTTTTAATTTTGGAATT TAAATTTGGTTCTATAAAATTCTGACTGTTGCTATCATGGTTTTTTCCTTAGTGACATAGAACATATCGAAGTGAGTATT ATAGTGGATATTTAAG
CDS sequence (LotjaGi1g1v0060100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACGGAGATATTGGAATTATGGACAAGGATATTGGAGAAAAAGGAACGTGTTTCAGGTTCAATGTGCTCCTCACATT ATTTGAGAGTGAGACAGTGAACGATGCTAGCGCAAGGGAATATCTTCAGCAAGGATCAGGTGACAAGACCCAAGCTTCAG TGAGAACCATTCATACTACTAGTTCTGCTTCAAGCATCTTTTCTGTGAGTCCCAGGTTACATATGTGCAGCTCTAGTCCT AGGCCTGAGGCTTCCCGTGTTGTTCTTTTGATTGGAGACGAGGAGCGCCGAAGGACTTGTCAGAGGTTCATGGAAAGCTT AGGGATTAAAGTCAAGGTTGTGAAGAATTGGAAAAATCTCTCTAATACTCTCGAGAAGATCAAACAGAAGTGTTACCGTT ATAATGGCCAAAGTTCTTCAGATTCTTCCAGTTTGAGTTCTCGGTCCACACCTCATAATTCTTCTGCTAAAGCTAGAGGA GTTCCTTTGAGTTCTATGGATGGAATTGAGTATTTACCTTCAGTGTTCAAGAAGACAGAAATTGGAGTTGCCCCGGGTTT CATCTTGATTGTCATTGATGCAAATGCAGGACCATTTTCTGAATTTGATATGATTGTATCCAACTTCAAGAAAAACATTT CCAACCCTTGTAAGGTTGTTTGGTTGGATAAACCACTTATGCGTAGTATCAACCTCGAAACACACAATCAAGATGACATC ATATCCAAACCGTTTCATGGTAGTCGTTTATTCCAAGTTATAAAGCTTCTTCCTGAGTATGGTGGTACATGGAAAACAAA TTTAAGTAAAGCTCAGAGAGAAAGAACTCCTGATATAGCTGGAAGTACTTGTAGTAGAGACTCAAGTTTATCAAGATACC ACTCTCCTCAGTTGATGGACAGATCACAAGTATCTCCACCTGATGAAAGTCCATGTCCAAGTGTTGAACAAGTTTGCAAA GGAACTCAGAAATCCTATGGTGGAAAGTCTATTGTTAATCAAGGAGAAATGCAAGAGTGTGGAGACTCAAGCAACGATAA CCAGCCTTTAAGGGGCAAGAAATTTTTGGTTGTTGAGGACACTAAAGCGTTAAGACATTTAGCTTTGTTTAAATTGAAGT CCCTTGGTGCAGCTACAGAGGAATGTGACAATGGTGAAAAGGCAGTGCAGCTAGTTAAGAAAGGTCTAGCCAAACCTCCC TATGATTGCATCTTAATGGACTGTCAGATGCCAGTGATGGATGGGTTTGAGGCAACAAGACAGATACGAGAGATGGAGAA GACCTATAGTGTTCACATTCCGATTATTGCATTATCTGCTGACAAAATAACGACAGAGACTGGAATGGACTTTCATTTAG TTAAGCCCTTTGATAGAGAGGATTTAATTGAAGCCATCAGATACATACAGAGAAAGGAGTTATGTGCATCTTAG
Protein sequence (LotjaGi1g1v0060100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHGDIGIMDKDIGEKGTCFRFNVLLTLFESETVNDASAREYLQQGSGDKTQASVRTIHTTSSASSIFSVSPRLHMCSSSP RPEASRVVLLIGDEERRRTCQRFMESLGIKVKVVKNWKNLSNTLEKIKQKCYRYNGQSSSDSSSLSSRSTPHNSSAKARG VPLSSMDGIEYLPSVFKKTEIGVAPGFILIVIDANAGPFSEFDMIVSNFKKNISNPCKVVWLDKPLMRSINLETHNQDDI ISKPFHGSRLFQVIKLLPEYGGTWKTNLSKAQRERTPDIAGSTCSRDSSLSRYHSPQLMDRSQVSPPDESPCPSVEQVCK GTQKSYGGKSIVNQGEMQECGDSSNDNQPLRGKKFLVVEDTKALRHLALFKLKSLGAATEECDNGEKAVQLVKKGLAKPP YDCILMDCQMPVMDGFEATRQIREMEKTYSVHIPIIALSADKITTETGMDFHLVKPFDREDLIEAIRYIQRKELCAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 470 | 470 | 3.6E-128 | – | |
| PANTHER | 1 | 470 | 470 | 3.6E-128 | – | |
| MobiDBLite | 137 | 161 | 25 | - | – | |
| MobiDBLite | 137 | 160 | 24 | - | – | |
| MobiDBLite | 269 | 316 | 48 | - | – | |
| MobiDBLite | 276 | 316 | 41 | - | – | |
| Gene3D | 334 | 474 | 141 | 2.2E-35 | – | |
| SUPERFAMILY | 349 | 469 | 121 | 4.7E-28 | ||
| SMART | 353 | 466 | 114 | 1.0E-24 | ||
| ProSiteProfiles | 354 | 470 | 117 | 32.463 | ||
| CDD | 356 | 467 | 112 | 9.33016E-28 | ||
| Pfam | 356 | 467 | 112 | 4.0E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Phosphorelay signal transduction system | A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. |
Expression pattern of LotjaGi1g1v0060100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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